| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g19986 | 5:23,348,339-23,348,854 | + | C2H5g11276 | CX5g039972 | LOC_Os05g49620 | Os05g0571200 | OsWRKY19 | Detail |
| C1H5g04002 | 5:23,349,083-23,351,954 | - | C2H5g07321 | CX5g039084 | LOC_Os05g49640 | - | - | Detail |
| C1H5g05630 | 5:23,352,898-23,354,661 | - | C2H5g09536 | CX5g039473 | LOC_Os05g49650 | Os05g0571400 | - | Detail |
| C1H5g23505 | 5:23,355,503-23,359,102 | - | C2H5g14116 | CX5g037409 | LOC_Os05g49680 | Os05g0571700 | - | Detail |
| C1H5g31650 | 5:23,362,863-23,363,681 | - | C2H5g01741 | CX5g038122 | LOC_Os05g49700 | Os05g0572000 | OsRPH1 | Detail |
| C1H5g09233 | 5:23,373,305-23,375,337 | - | C2H5g01004 | CX5g040343 | LOC_Os05g49730 | Os05g0572700 | - | Detail |
| C1H5g26987 | 5:23,383,966-23,386,029 | - | C2H5g20444 | CX5g037759 | LOC_Os05g49740 | Os05g0572900 | - | Detail |
| C1H5g12531 | 5:23,387,390-23,390,584 | - | C2H5g08690 | CX5g039397 | LOC_Os05g49750 | Os05g0573000 | - | Detail |
| C1H5g06006 | 5:23,393,492-23,396,694 | + | C2H5g17652 | CX5g036976 | LOC_Os05g49760 | Os05g0573200 | - | Detail |
| C1H5g18333 | 5:23,396,913-23,403,221 | - | C2H5g07346 | CX5g036857 | LOC_Os05g49770 | Os05g0573300 | - | Detail |
| C1H5g30361 | 5:23,418,717-23,421,879 | + | C2H5g13745 | CX5g039933 | LOC_Os05g49780 | Os05g0573500 | HAP3C, OsHAP3C, OsNF-YB-4, NFYB4 | Detail |
| C1H5g18248 | 5:23,424,184-23,424,597 | - | C2H5g25143 | CX5g040236 | LOC_Os05g49790 | Os05g0573600 | - | Detail |
| C1H5g00854 | 5:23,425,294-23,428,727 | - | C2H5g09568 | CX5g037555 | LOC_Os05g49800 | Os05g0573700 | - | Detail |
| C1H5g11098 | 5:23,431,341-23,434,573 | + | C2H5g07066 | CX5g040047 | LOC_Os05g49810 | Os05g0573800 | - | Detail |
| C1H5g10056 | 5:23,434,882-23,438,835 | - | C2H5g06386 | CX5g037660 | LOC_Os05g49820 | Os05g0573900 | - | Detail |
| C1H5g18130 | 5:23,443,309-23,444,627 | + | C2H5g04324 | CX5g038298 | LOC_Os05g49830 | Os05g0574000 | - | Detail |
| C1H5g18110 | 5:23,444,873-23,448,713 | - | C2H5g11612 | CX5g038739 | LOC_Os05g49840 | Os05g0574100 | - | Detail |
| C1H5g16150 | 5:23,452,828-23,453,286 | + | C2H5g16314 | CX5g037745 | LOC_Os05g49860 | Os05g0574300 | - | Detail |
| C1H5g12972 | 5:23,454,880-23,458,472 | - | C2H5g21858 | CX5g037549 | LOC_Os05g49880 | Os05g0574400 | OsMDH5.1 | Detail |
| C1H5g25768 | 5:23,460,150-23,462,384 | - | C2H5g16147 | CX5g040904 | LOC_Os05g49890 | Os05g0574500 | OsRAN2 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g14013 | 1:21,032,065-21,035,863 | - | C1H1g08879 | CX1g006848 | LOC_Os01g41750 | Os01g0601625 | - | Detail |
| C2H1g16059 | 1:21,078,188-21,079,384 | - | C1H1g19788 | CX1g006511 | LOC_Os01g41780 | Os01g0601700 | - | Detail |
| C2H1g29858 | 1:21,087,080-21,087,584 | - | C1H1g08927 | - | - | - | - | Detail |
| C2H1g29899 | 1:21,104,130-21,106,994 | - | C1H1g16376 | CX1g006511 | LOC_Os01g41770 | Os01g0601675 | - | Detail |
| C2H1g02945 | 1:21,137,243-21,139,838 | - | C1H1g19788 | CX1g002379 | LOC_Os01g41770 | Os01g0809300 | LRR1, OsLRR1 | Detail |
| C2H1g19450 | 1:21,188,436-21,191,542 | - | C1H1g30244 | CX1g005051 | LOC_Os01g41800 | Os01g0602200 | CYP72A31 | Detail |
| C2H1g05141 | 1:21,217,243-21,219,905 | - | C1H1g22213 | CX1g005419 | LOC_Os01g41810 | Os01g0602400 | - | Detail |
| C2H1g30376 | 1:21,226,059-21,229,115 | - | C1H1g22360 | CX1g003299 | LOC_Os01g41820 | Os01g0602500 | - | Detail |
| C2H1g19557 | 1:21,231,750-21,232,763 | - | C1H1g05853 | CX1g000347 | LOC_Os01g41834 | Os01g0602600 | - | Detail |
| C2H1g15079 | 1:21,278,591-21,283,918 | + | C1H1g05516 | CX1g005328 | LOC_Os01g41870 | Os01g0602800 | - | Detail |
| C2H1g19193 | 1:21,292,267-21,296,197 | - | C1H1g22010 | CX1g001319 | LOC_Os01g41880 | Os01g0603000 | - | Detail |
| C2H1g25531 | 1:21,298,972-21,299,424 | + | - | - | - | - | - | Detail |
| C2H1g00117 | 1:21,312,441-21,314,461 | + | C1H1g14967 | CX1g000319 | LOC_Os01g41900 | Os01g0603300 | - | Detail |
| C2H1g12509 | 1:21,332,659-21,333,513 | - | - | - | - | - | - | Detail |
| C2H1g00948 | 1:21,347,467-21,354,759 | + | C1H1g29168 | CX1g006511 | LOC_Os01g41950 | Os01g0604150 | - | Detail |
| C2H1g07120 | 1:21,360,778-21,361,475 | - | C1H1g06943 | - | - | - | - | Detail |
| C2H1g14362 | 1:21,369,878-21,373,718 | - | C1H1g02821 | CX1g006048 | LOC_Os01g42010 | Os01g0604700 | - | Detail |
| C2H1g02941 | 1:21,385,307-21,386,946 | + | C1H1g28348 | CX1g006060 | LOC_Os01g42030 | Os01g0605100 | - | Detail |
| C2H1g14724 | 1:21,390,492-21,392,760 | + | C1H1g14962 | CX1g000014 | LOC_Os01g42040 | Os01g0605300 | - | Detail |
| C2H1g28671 | 1:21,393,220-21,396,453 | + | C1H1g16958 | CX1g000292 | LOC_Os01g42060 | Os01g0605400 | OsGEX3 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |