| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g17232 | 5:21,641,163-21,648,321 | + | C2H5g13260 | CX5g039556 | LOC_Os05g45720 | Os05g0533600 | SSIVB, OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2 | Detail |
| C1H5g27858 | 5:21,648,946-21,651,000 | + | C2H5g03217 | CX5g039089 | LOC_Os05g45730 | Os05g0533700 | - | Detail |
| C1H5g22620 | 5:21,652,074-21,653,596 | + | C2H5g09746 | CX5g038471 | LOC_Os05g45740 | Os05g0533800 | - | Detail |
| C1H5g12717 | 5:21,654,766-21,658,510 | + | C2H5g27500 | CX5g038527 | LOC_Os05g45750 | Os05g0533900 | - | Detail |
| C1H5g28841 | 5:21,658,953-21,660,872 | - | C2H5g28882 | CX5g040105 | LOC_Os05g45760 | Os05g0534000 | - | Detail |
| C1H5g15352 | 5:21,661,859-21,664,094 | + | C2H5g06715 | CX5g036728 | LOC_Os05g45770 | Os05g0534100 | - | Detail |
| C1H5g11246 | 5:21,673,277-21,674,219 | + | - | CX5g040134 | - | - | - | Detail |
| C1H5g21827 | 5:21,675,920-21,677,372 | + | C2H5g12404 | CX5g040749 | LOC_Os05g45810 | Os05g0534400 | OsCBL4 | Detail |
| C1H5g13213 | 5:21,677,885-21,681,504 | - | C2H5g20385 | CX5g037499 | LOC_Os05g45820 | Os05g0534500 | - | Detail |
| C1H5g03368 | 5:21,685,266-21,690,601 | - | C2H5g26781 | CX5g039192 | LOC_Os05g45830 | Os05g0534600 | - | Detail |
| C1H5g18942 | 5:21,693,054-21,698,378 | + | C2H5g01370 | CX5g040022 | LOC_Os05g45840 | Os05g0534800 | - | Detail |
| C1H5g12782 | 5:21,699,530-21,702,184 | + | C2H5g21069 | CX5g037833 | LOC_Os05g45850 | Os05g0534900 | - | Detail |
| C1H5g14563 | 5:21,705,589-21,708,813 | - | C2H5g29794 | CX5g037747 | LOC_Os05g45860 | Os05g0535100 | - | Detail |
| C1H5g01171 | 5:21,710,326-21,710,785 | + | C2H5g19676 | - | - | - | - | Detail |
| C1H5g05296 | 5:21,711,820-21,712,482 | - | C2H5g22490 | CX5g037885 | - | Os07g0631500 | - | Detail |
| C1H5g29728 | 5:21,725,141-21,728,294 | + | C2H5g10427 | CX5g038811 | LOC_Os05g45870 | Os05g0535200 | - | Detail |
| C1H5g30804 | 5:21,730,449-21,731,275 | + | C2H5g08565 | CX5g039224 | LOC_Os05g45870 | Os05g0535300 | - | Detail |
| C1H5g31590 | 5:21,733,376-21,736,850 | + | C2H5g19368 | CX5g037476 | LOC_Os05g45880 | Os05g0535400 | - | Detail |
| C1H5g15501 | 5:21,738,283-21,742,921 | + | C2H5g22595 | CX5g039666 | LOC_Os05g45890 | Os05g0535500 | AET1 | Detail |
| C1H5g07739 | 5:21,743,275-21,746,906 | - | C2H5g08199 | CX5g036985 | LOC_Os05g45900 | Os05g0535600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g20105 | 4:6,705,266-6,705,853 | + | - | - | - | - | - | Detail |
| C2H4g20550 | 4:6,707,768-6,709,158 | + | C1H4g30629 | CX4g035112 | LOC_Os04g13140 | Os04g0208200 | - | Detail |
| C2H4g17798 | 4:6,710,843-6,712,726 | - | C1H4g15636 | CX4g033448 | LOC_Os04g13150 | Os04g0208400 | BRT1, OsFBX125 | Detail |
| C2H4g01739 | 4:6,716,088-6,717,840 | - | C1H4g07664 | CX4g032433 | LOC_Os04g13160 | Os04g0208500 | - | Detail |
| C2H4g10339 | 4:6,720,625-6,722,435 | - | C1H4g06544 | CX4g035372 | LOC_Os04g13170 | Os04g0208600 | - | Detail |
| C2H4g00571 | 4:6,758,074-6,769,349 | - | C1H4g10533 | CX4g033845 | LOC_Os04g13210 | Os04g0209200 | OsABCC9 | Detail |
| C2H4g15555 | 4:6,777,720-6,785,840 | - | C1H4g24328 | CX4g033865 | LOC_Os04g13220 | Os04g0209300 | - | Detail |
| C2H4g02817 | 4:6,812,996-6,816,312 | + | - | - | LOC_Os04g13260 | - | - | Detail |
| C2H4g04516 | 4:6,832,978-6,833,205 | + | C1H4g07264 | - | - | - | - | Detail |
| C2H4g06684 | 4:6,872,076-6,875,130 | + | C1H4g15372 | CX4g033836 | LOC_Os04g13364 | Os04g0210700 | - | Detail |
| C2H4g07997 | 4:6,903,171-6,904,403 | - | C1H4g21611 | CX4g034363 | LOC_Os04g13460 | Os04g0211900 | - | Detail |
| C2H4g28740 | 4:6,914,362-6,928,209 | + | C1H4g12804 | CX4g033200 | LOC_Os04g13470 | Os04g0212200 | - | Detail |
| C2H4g27029 | 4:6,931,932-6,932,470 | + | C1H4g25525 | CX4g033217 | LOC_Os04g13480 | Os04g0212450 | - | Detail |
| C2H4g27586 | 4:6,978,065-6,979,670 | + | C1H4g04473 | CX4g031980 | LOC_Os04g13530 | Os04g0212700 | - | Detail |
| C2H4g09067 | 4:7,034,258-7,036,783 | + | C1H4g27274 | CX4g035833 | LOC_Os04g13590 | Os04g0152400 | - | Detail |
| C2H4g24663 | 4:7,159,216-7,159,786 | + | - | CX4g033913 | - | Os04g0217500 | - | Detail |
| C2H4g12846 | 4:7,166,902-7,231,033 | + | C1H4g24799 | CX4g036380 | LOC_Os04g14130 | Os04g0218100 | - | Detail |
| C2H4g05575 | 4:7,186,077-7,192,112 | - | C1H4g17468 | CX4g033439 | LOC_Os04g14190 | Os04g0218900 | - | Detail |
| C2H4g11659 | 4:7,248,263-7,252,104 | - | - | CX4g035219 | LOC_Os04g12730 | Os04g0272500 | - | Detail |
| C2H4g23433 | 4:7,272,898-7,282,635 | + | C1H4g15248 | CX4g032084 | LOC_Os04g14304 | Os04g0220300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |