| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g17232 | 5:21,641,163-21,648,321 | + | C2H5g13260 | CX5g039556 | LOC_Os05g45720 | Os05g0533600 | SSIVB, OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2 | Detail |
| C1H5g27858 | 5:21,648,946-21,651,000 | + | C2H5g03217 | CX5g039089 | LOC_Os05g45730 | Os05g0533700 | - | Detail |
| C1H5g22620 | 5:21,652,074-21,653,596 | + | C2H5g09746 | CX5g038471 | LOC_Os05g45740 | Os05g0533800 | - | Detail |
| C1H5g12717 | 5:21,654,766-21,658,510 | + | C2H5g27500 | CX5g038527 | LOC_Os05g45750 | Os05g0533900 | - | Detail |
| C1H5g28841 | 5:21,658,953-21,660,872 | - | C2H5g28882 | CX5g040105 | LOC_Os05g45760 | Os05g0534000 | - | Detail |
| C1H5g15352 | 5:21,661,859-21,664,094 | + | C2H5g06715 | CX5g036728 | LOC_Os05g45770 | Os05g0534100 | - | Detail |
| C1H5g11246 | 5:21,673,277-21,674,219 | + | - | CX5g040134 | - | - | - | Detail |
| C1H5g21827 | 5:21,675,920-21,677,372 | + | C2H5g12404 | CX5g040749 | LOC_Os05g45810 | Os05g0534400 | OsCBL4 | Detail |
| C1H5g13213 | 5:21,677,885-21,681,504 | - | C2H5g20385 | CX5g037499 | LOC_Os05g45820 | Os05g0534500 | - | Detail |
| C1H5g03368 | 5:21,685,266-21,690,601 | - | C2H5g26781 | CX5g039192 | LOC_Os05g45830 | Os05g0534600 | - | Detail |
| C1H5g18942 | 5:21,693,054-21,698,378 | + | C2H5g01370 | CX5g040022 | LOC_Os05g45840 | Os05g0534800 | - | Detail |
| C1H5g12782 | 5:21,699,530-21,702,184 | + | C2H5g21069 | CX5g037833 | LOC_Os05g45850 | Os05g0534900 | - | Detail |
| C1H5g14563 | 5:21,705,589-21,708,813 | - | C2H5g29794 | CX5g037747 | LOC_Os05g45860 | Os05g0535100 | - | Detail |
| C1H5g01171 | 5:21,710,326-21,710,785 | + | C2H5g19676 | - | - | - | - | Detail |
| C1H5g05296 | 5:21,711,820-21,712,482 | - | C2H5g22490 | CX5g037885 | - | Os07g0631500 | - | Detail |
| C1H5g29728 | 5:21,725,141-21,728,294 | + | C2H5g10427 | CX5g038811 | LOC_Os05g45870 | Os05g0535200 | - | Detail |
| C1H5g30804 | 5:21,730,449-21,731,275 | + | C2H5g08565 | CX5g039224 | LOC_Os05g45870 | Os05g0535300 | - | Detail |
| C1H5g31590 | 5:21,733,376-21,736,850 | + | C2H5g19368 | CX5g037476 | LOC_Os05g45880 | Os05g0535400 | - | Detail |
| C1H5g15501 | 5:21,738,283-21,742,921 | + | C2H5g22595 | CX5g039666 | LOC_Os05g45890 | Os05g0535500 | AET1 | Detail |
| C1H5g07739 | 5:21,743,275-21,746,906 | - | C2H5g08199 | CX5g036985 | LOC_Os05g45900 | Os05g0535600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H6g13564 | 6:15,363,948-15,364,406 | + | - | CX6g043769 | LOC_Os06g23050 | - | - | Detail |
| C2H6g10740 | 6:15,434,160-15,434,378 | - | - | - | - | - | - | Detail |
| C2H6g09840 | 6:15,434,436-15,434,633 | - | - | - | - | - | - | Detail |
| C2H6g21569 | 6:15,436,329-15,439,376 | - | C1H6g30468 | CX6g041434 | LOC_Os06g22980 | Os06g0336500 | OsCSLD5 | Detail |
| C2H6g15145 | 6:15,443,572-15,444,963 | - | C1H6g14396 | CX6g043929 | LOC_Os06g22960 | Os06g0336200 | - | Detail |
| C2H6g06420 | 6:15,470,857-15,472,859 | - | C1H6g08313 | CX6g042107 | LOC_Os06g22919 | Os06g0335975 | - | Detail |
| C2H6g04469 | 6:15,483,385-15,483,738 | + | C1H6g08872 | CX6g044968 | LOC_Os06g22880 | - | - | Detail |
| C2H6g22727 | 6:15,497,300-15,500,514 | - | C1H6g29665 | CX6g041410 | LOC_Os06g22870 | Os06g0335500 | - | Detail |
| C2H6g26630 | 6:15,538,630-15,538,890 | - | - | CX6g044983 | LOC_Os06g22850 | Os06g0335101 | MFAP1 | Detail |
| C2H6g11989 | 6:15,555,338-15,559,097 | + | C1H6g29334 | CX6g042225 | LOC_Os06g22820 | Os06g0334400 | - | Detail |
| C2H6g24500 | 6:15,560,416-15,564,682 | - | C1H6g03947 | CX6g043751 | LOC_Os06g22810 | Os06g0334300 | - | Detail |
| C2H6g14344 | 6:15,625,672-15,631,940 | - | - | CX6g043449 | - | Os06g0333600 | - | Detail |
| C2H6g16649 | 6:15,642,457-15,648,605 | + | C1H6g24465 | CX6g042196 | LOC_Os06g22700 | Os06g0332900 | - | Detail |
| C2H6g00706 | 6:15,657,720-15,659,851 | + | C1H6g09061 | CX6g045721 | LOC_Os06g22690 | Os06g0332800 | - | Detail |
| C2H6g06753 | 6:15,663,248-15,672,432 | + | C1H6g07272 | CX6g045726 | LOC_Os06g22670 | Os06g0332700 | - | Detail |
| C2H6g22301 | 6:15,670,670-15,673,998 | - | C1H6g15783 | CX6g043543 | LOC_Os06g22660 | Os06g0332600 | - | Detail |
| C2H6g09049 | 6:15,679,493-15,679,750 | + | C1H6g12037 | CX6g044702 | LOC_Os06g22654 | Os06g0332500 | - | Detail |
| C2H6g08521 | 6:15,683,298-15,691,543 | - | C1H6g19506 | CX6g042511 | LOC_Os06g22650 | Os06g0332400 | - | Detail |
| C2H6g13258 | 6:15,757,019-15,758,405 | - | C1H6g20948 | - | LOC_Os06g30760 | - | - | Detail |
| C2H6g12922 | 6:15,767,328-15,771,643 | - | C1H6g10286 | CX6g042971 | LOC_Os06g30750 | Os06g0503400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |