| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g20589 | 5:20,905,867-20,906,226 | - | C2H5g19371 | CX5g039772 | - | Os05g0516100 | - | Detail |
| C1H5g26916 | 5:20,910,102-20,911,889 | + | C2H5g04233 | CX5g039979 | LOC_Os05g44020 | Os05g0516300 | - | Detail |
| C1H5g24467 | 5:20,917,898-20,918,944 | - | C2H5g15773 | CX5g039876 | - | Os05g0516475 | - | Detail |
| C1H5g15470 | 5:20,919,374-20,922,205 | + | C2H5g13797 | CX5g038417 | LOC_Os05g44030 | Os05g0516400 | - | Detail |
| C1H5g19283 | 5:20,922,718-20,923,179 | + | C2H5g13797 | CX5g038417 | LOC_Os05g44030 | Os05g0516400 | - | Detail |
| C1H5g14981 | 5:20,925,289-20,927,980 | + | C2H5g04641 | CX5g039493 | LOC_Os05g44050 | Os05g0516600 | OsRab7, OsRab7B3 | Detail |
| C1H5g10610 | 5:20,929,789-20,930,316 | + | C2H5g05743 | CX5g041146 | LOC_Os05g44060 | Os05g0516700 | - | Detail |
| C1H5g20151 | 5:20,931,064-20,931,702 | - | C2H5g24588 | CX5g039048 | LOC_Os05g44070 | Os05g0516800 | - | Detail |
| C1H5g21266 | 5:20,940,354-20,940,614 | - | C2H5g24588 | CX5g039048 | LOC_Os05g44070 | Os05g0516800 | - | Detail |
| C1H5g05035 | 5:20,942,661-20,948,548 | + | C2H5g20039 | CX5g039615 | LOC_Os05g44080 | Os05g0516900 | OsMac3 | Detail |
| C1H5g21400 | 5:20,949,458-20,950,402 | - | C2H5g04869 | CX5g038718 | LOC_Os05g44090 | Os05g0517100 | - | Detail |
| C1H5g00428 | 5:20,956,119-20,960,926 | + | C2H5g18358 | CX5g040204 | LOC_Os05g44100 | Os05g0517200 | - | Detail |
| C1H5g00439 | 5:20,964,090-20,965,132 | + | C2H5g21345 | CX5g037887 | LOC_Os05g44120 | Os05g0517400 | - | Detail |
| C1H5g15240 | 5:20,966,912-20,971,099 | - | C2H5g27310 | CX5g040072 | LOC_Os05g44130 | Os05g0517500 | - | Detail |
| C1H5g27527 | 5:20,972,270-20,975,554 | - | C2H5g03251 | CX5g039695 | LOC_Os05g44140 | Os05g0517600 | Hb5 | Detail |
| C1H5g21769 | 5:20,976,669-20,978,873 | + | C2H5g27370 | CX5g040040 | LOC_Os05g44160 | Os05g0517800 | - | Detail |
| C1H5g08677 | 5:20,979,685-20,980,923 | + | C2H5g00950 | CX5g037606 | LOC_Os05g44170 | Os05g0517900 | - | Detail |
| C1H5g28867 | 5:20,982,079-20,982,889 | - | C2H5g12138 | CX5g039831 | LOC_Os05g44180 | Os05g0518000 | OsFTL10 | Detail |
| C1H5g21350 | 5:20,992,158-20,996,646 | + | C2H5g05606 | CX5g040142 | LOC_Os05g44190 | Os05g0518200 | - | Detail |
| C1H5g09247 | 5:20,998,142-21,000,116 | - | C2H5g18484 | CX5g037767 | LOC_Os05g44200 | Os05g0518300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g02593 | 4:29,326,920-29,329,525 | - | C1H4g30864 | CX4g036239 | LOC_Os04g56970 | Os04g0665400 | - | Detail |
| C2H4g28957 | 4:29,330,937-29,334,919 | + | C1H4g09343 | CX4g033681 | LOC_Os04g56980 | Os04g0665500 | - | Detail |
| C2H4g00001 | 4:29,335,587-29,337,864 | - | C1H4g05828 | CX4g031794 | LOC_Os04g56990 | Os04g0665600 | RLI1b | Detail |
| C2H4g12242 | 4:29,346,217-29,350,384 | + | C1H4g09596 | CX4g036304 | LOC_Os04g57010 | Os04g0665700 | - | Detail |
| C2H4g11326 | 4:29,350,962-29,353,825 | + | C1H4g30725 | CX4g034037 | LOC_Os04g57020 | Os04g0665800 | - | Detail |
| C2H4g21652 | 4:29,354,782-29,355,237 | - | - | CX4g034903 | LOC_Os04g57030 | Os04g0665900 | - | Detail |
| C2H4g19860 | 4:29,362,450-29,363,014 | + | C1H4g22043 | CX4g033683 | LOC_Os04g57050 | Os04g0665200 | IAMT1, OsIAMT1, OsSABATH4 | Detail |
| C2H4g10951 | 4:29,379,023-29,380,236 | - | C1H4g10999 | CX4g036202 | LOC_Os04g35610 | Os04g0118700 | - | Detail |
| C2H4g15180 | 4:29,387,199-29,389,061 | + | C1H4g22979 | CX4g031479 | LOC_Os04g57050 | Os04g0665200 | IAMT1, OsIAMT1, OsSABATH4 | Detail |
| C2H4g00735 | 4:29,390,985-29,393,367 | + | C1H4g03241 | CX4g031479 | LOC_Os04g57050 | Os04g0665200 | IAMT1, OsIAMT1, OsSABATH4 | Detail |
| C2H4g03747 | 4:29,396,383-29,398,015 | + | C1H4g01851 | CX4g031479 | LOC_Os04g57080 | Os04g0665200 | IAMT1, OsIAMT1, OsSABATH4 | Detail |
| C2H4g03474 | 4:29,400,385-29,401,819 | + | C1H4g29852 | CX4g031652 | LOC_Os04g57090 | Os04g0665200 | IAMT1, OsIAMT1, OsSABATH4 | Detail |
| C2H4g06767 | 4:29,415,602-29,416,401 | - | C1H4g05569 | CX4g036468 | LOC_Os04g57130 | Os04g0666800 | - | Detail |
| C2H4g00020 | 4:29,417,068-29,427,230 | - | C1H4g31368 | CX4g031983 | LOC_Os04g57140 | Os04g0666900 | - | Detail |
| C2H4g16878 | 4:29,428,962-29,429,486 | + | - | CX4g036271 | LOC_Os04g43720 | Os04g0517600 | - | Detail |
| C2H4g20070 | 4:29,431,894-29,432,340 | - | - | - | - | - | - | Detail |
| C2H4g09686 | 4:29,431,991-29,432,428 | + | - | - | - | - | - | Detail |
| C2H4g30626 | 4:29,434,012-29,437,838 | - | C1H4g07804 | CX4g034693 | LOC_Os04g57150 | Os04g0667000 | - | Detail |
| C2H4g27314 | 4:29,439,637-29,441,953 | + | C1H4g29276 | CX4g034777 | LOC_Os04g57160 | Os04g0667200 | - | Detail |
| C2H4g03010 | 4:29,447,466-29,448,038 | - | C1H4g22147 | CX4g031690 | LOC_Os04g57180 | Os04g0667400 | M2H, 2-ODD 21 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |