| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g20589 | 5:20,905,867-20,906,226 | - | C2H5g19371 | CX5g039772 | - | Os05g0516100 | - | Detail |
| C1H5g26916 | 5:20,910,102-20,911,889 | + | C2H5g04233 | CX5g039979 | LOC_Os05g44020 | Os05g0516300 | - | Detail |
| C1H5g24467 | 5:20,917,898-20,918,944 | - | C2H5g15773 | CX5g039876 | - | Os05g0516475 | - | Detail |
| C1H5g15470 | 5:20,919,374-20,922,205 | + | C2H5g13797 | CX5g038417 | LOC_Os05g44030 | Os05g0516400 | - | Detail |
| C1H5g19283 | 5:20,922,718-20,923,179 | + | C2H5g13797 | CX5g038417 | LOC_Os05g44030 | Os05g0516400 | - | Detail |
| C1H5g14981 | 5:20,925,289-20,927,980 | + | C2H5g04641 | CX5g039493 | LOC_Os05g44050 | Os05g0516600 | OsRab7, OsRab7B3 | Detail |
| C1H5g10610 | 5:20,929,789-20,930,316 | + | C2H5g05743 | CX5g041146 | LOC_Os05g44060 | Os05g0516700 | - | Detail |
| C1H5g20151 | 5:20,931,064-20,931,702 | - | C2H5g24588 | CX5g039048 | LOC_Os05g44070 | Os05g0516800 | - | Detail |
| C1H5g21266 | 5:20,940,354-20,940,614 | - | C2H5g24588 | CX5g039048 | LOC_Os05g44070 | Os05g0516800 | - | Detail |
| C1H5g05035 | 5:20,942,661-20,948,548 | + | C2H5g20039 | CX5g039615 | LOC_Os05g44080 | Os05g0516900 | OsMac3 | Detail |
| C1H5g21400 | 5:20,949,458-20,950,402 | - | C2H5g04869 | CX5g038718 | LOC_Os05g44090 | Os05g0517100 | - | Detail |
| C1H5g00428 | 5:20,956,119-20,960,926 | + | C2H5g18358 | CX5g040204 | LOC_Os05g44100 | Os05g0517200 | - | Detail |
| C1H5g00439 | 5:20,964,090-20,965,132 | + | C2H5g21345 | CX5g037887 | LOC_Os05g44120 | Os05g0517400 | - | Detail |
| C1H5g15240 | 5:20,966,912-20,971,099 | - | C2H5g27310 | CX5g040072 | LOC_Os05g44130 | Os05g0517500 | - | Detail |
| C1H5g27527 | 5:20,972,270-20,975,554 | - | C2H5g03251 | CX5g039695 | LOC_Os05g44140 | Os05g0517600 | Hb5 | Detail |
| C1H5g21769 | 5:20,976,669-20,978,873 | + | C2H5g27370 | CX5g040040 | LOC_Os05g44160 | Os05g0517800 | - | Detail |
| C1H5g08677 | 5:20,979,685-20,980,923 | + | C2H5g00950 | CX5g037606 | LOC_Os05g44170 | Os05g0517900 | - | Detail |
| C1H5g28867 | 5:20,982,079-20,982,889 | - | C2H5g12138 | CX5g039831 | LOC_Os05g44180 | Os05g0518000 | OsFTL10 | Detail |
| C1H5g21350 | 5:20,992,158-20,996,646 | + | C2H5g05606 | CX5g040142 | LOC_Os05g44190 | Os05g0518200 | - | Detail |
| C1H5g09247 | 5:20,998,142-21,000,116 | - | C2H5g18484 | CX5g037767 | LOC_Os05g44200 | Os05g0518300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g23906 | 1:3,381,483-3,385,918 | - | C1H1g05589 | CX1g001976 | LOC_Os01g08020 | Os01g0175600 | BOR2, OsBOR2, OsBOR3 | Detail |
| C2H1g04507 | 1:3,398,823-3,403,477 | - | C1H1g28606 | CX1g006212 | LOC_Os01g08020 | Os01g0175700 | BOR2, OsBOR2, OsBOR3 | Detail |
| C2H1g23380 | 1:3,413,356-3,414,660 | - | C1H1g24276 | CX1g003747 | LOC_Os01g08090 | Os01g0175850 | - | Detail |
| C2H1g06989 | 1:3,415,463-3,415,867 | - | C1H1g02538 | CX1g003747 | LOC_Os01g08110 | Os01g0175850 | - | Detail |
| C2H1g10547 | 1:3,417,407-3,418,830 | + | C1H1g24276 | CX1g006769 | LOC_Os01g08090 | Os01g0176000 | - | Detail |
| C2H1g11095 | 1:3,421,993-3,423,776 | + | C1H1g30308 | CX1g003023 | LOC_Os01g08100 | Os01g0176100 | - | Detail |
| C2H1g17460 | 1:3,425,241-3,426,876 | + | C1H1g02538 | CX1g005553 | LOC_Os01g08110 | Os01g0176200 | - | Detail |
| C2H1g07226 | 1:3,428,224-3,430,095 | - | C1H1g07070 | CX1g004833 | LOC_Os01g08120 | Os01g0176300 | - | Detail |
| C2H1g17877 | 1:3,433,400-3,438,193 | + | C1H1g22640 | CX1g005143 | LOC_Os01g08140 | Os01g0176400 | - | Detail |
| C2H1g05536 | 1:3,438,244-3,441,512 | - | C1H1g06103 | CX1g005306 | LOC_Os01g08150 | Os01g0176500 | - | Detail |
| C2H1g25065 | 1:3,452,030-3,453,892 | + | C1H1g20288 | CX1g006352 | LOC_Os01g08160 | Os01g0176700 | - | Detail |
| C2H1g28512 | 1:3,457,558-3,460,824 | + | - | CX1g002845 | LOC_Os01g08170 | Os01g0176800 | - | Detail |
| C2H1g06706 | 1:3,461,330-3,462,703 | - | C1H1g31422 | CX1g005369 | LOC_Os01g08180 | Os01g0176900 | - | Detail |
| C2H1g26258 | 1:3,472,856-3,481,479 | + | C1H1g14865 | CX1g004627 | LOC_Os01g08190 | Os01g0177100 | - | Detail |
| C2H1g16195 | 1:3,483,355-3,492,235 | + | C1H1g25960 | CX1g003518 | LOC_Os01g08200 | Os01g0177200 | - | Detail |
| C2H1g03295 | 1:3,501,968-3,503,204 | - | C1H1g22558 | CX1g003748 | LOC_Os01g08220 | Os01g0177400 | D18, d18-h (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, GA3ox-2 | Detail |
| C2H1g21612 | 1:3,517,183-3,518,727 | + | C1H9g14927 | CX1g001472 | LOC_Os01g20190 | Os06g0474600 | - | Detail |
| C2H1g12398 | 1:3,535,939-3,545,731 | - | C1H1g04757 | CX1g004229 | LOC_Os01g08260 | Os01g0177900 | - | Detail |
| C2H1g19074 | 1:3,553,284-3,558,271 | - | C1H1g28750 | CX1g004531 | LOC_Os01g08270 | Os01g0178000 | - | Detail |
| C2H1g18970 | 1:3,559,896-3,563,139 | + | C1H1g30727 | CX1g004172 | LOC_Os01g08280 | Os01g0178100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |