| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g04787 | 5:20,541,504-20,545,318 | + | C2H5g13301 | CX5g036865 | LOC_Os05g43230 | Os05g0508300 | - | Detail |
| C1H5g17723 | 5:20,546,615-20,551,056 | + | C2H5g18645 | CX5g036817 | LOC_Os05g43240 | Os05g0508400 | - | Detail |
| C1H5g24403 | 5:20,552,073-20,554,608 | + | C2H5g18041 | CX5g039246 | - | Os05g0169000 | - | Detail |
| C1H5g06065 | 5:20,555,601-20,557,739 | + | C2H5g09062 | CX5g040481 | LOC_Os05g43252 | Os05g0508500 | OsTrxh2 | Detail |
| C1H5g01563 | 5:20,560,336-20,571,721 | + | C2H5g17689 | CX5g038536 | LOC_Os05g43280 | Os05g0508700 | - | Detail |
| C1H5g09451 | 5:20,573,976-20,579,150 | + | C2H5g12299 | CX5g041072 | LOC_Os05g43300 | Os05g0508800 | - | Detail |
| C1H5g08280 | 5:20,579,641-20,580,326 | + | C2H5g28018 | CX5g039371 | LOC_Os05g43310 | Os05g0508900 | - | Detail |
| C1H5g11413 | 5:20,582,607-20,585,529 | + | C2H5g05240 | CX5g037153 | LOC_Os05g43360 | Os05g0509200 | - | Detail |
| C1H5g23290 | 5:20,586,556-20,592,440 | + | C2H5g08227 | CX5g039836 | LOC_Os05g43374 | Os05g0509300 | - | Detail |
| C1H5g18210 | 5:20,592,912-20,593,397 | - | C2H5g21027 | CX5g038317 | - | Os05g0509400 | - | Detail |
| C1H5g08200 | 5:20,593,695-20,595,136 | - | C2H5g09571 | CX5g038317 | LOC_Os05g43380 | Os05g0509400 | - | Detail |
| C1H5g09672 | 5:20,598,986-20,601,903 | - | C2H5g23315 | CX5g039296 | LOC_Os05g43390 | Os05g0509500 | - | Detail |
| C1H5g24566 | 5:20,604,122-20,607,411 | + | C2H5g08602 | CX5g041045 | LOC_Os05g44410 | Os05g0509800 | - | Detail |
| C1H5g06721 | 5:20,608,500-20,610,280 | - | C2H5g17414 | CX5g041066 | LOC_Os05g43440 | Os05g0509700 | OsmtSSB1, TA1 | Detail |
| C1H5g24969 | 5:20,611,848-20,614,344 | - | C2H5g13885 | CX5g040440 | LOC_Os05g43450 | Os05g0509900 | - | Detail |
| C1H5g08854 | 5:20,617,113-20,617,814 | + | C2H5g06315 | CX5g037150 | LOC_Os05g43460 | Os05g0510100 | - | Detail |
| C1H5g22806 | 5:20,619,111-20,623,771 | - | C2H5g30303 | CX5g036841 | LOC_Os05g43470 | Os05g0510200 | - | Detail |
| C1H5g07819 | 5:20,625,732-20,632,024 | + | C2H5g11558 | CX5g039782 | LOC_Os05g43480 | Os05g0510300 | - | Detail |
| C1H5g09587 | 5:20,635,094-20,638,599 | + | C2H5g22480 | CX5g039818 | LOC_Os05g43490 | Os05g0510400 | - | Detail |
| C1H5g05512 | 5:20,641,452-20,643,197 | - | C2H5g22816 | CX5g039867 | LOC_Os05g43510 | Os05g0510600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g06482 | 2:29,371,707-29,373,467 | + | C1H2g24237 | CX2g020266 | LOC_Os02g52480 | Os02g0762400 | KRP1, OsiICK1, Orysa;KRP1, OrysaICK1, Orysa;ICK1, CDKI | Detail |
| C2H2g14994 | 2:29,379,968-29,380,435 | - | - | CX2g020064 | LOC_Os02g52490 | Os02g0762600 | SGL1 | Detail |
| C2H2g29446 | 2:29,385,573-29,394,313 | - | C1H2g04159 | CX2g022518 | LOC_Os02g52510 | Os02g0762800 | OsRad54 | Detail |
| C2H2g01751 | 2:29,397,002-29,397,304 | - | - | CX2g023245 | LOC_Os02g52540 | - | - | Detail |
| C2H2g11954 | 2:29,401,275-29,402,154 | + | C1H2g10187 | CX2g023141 | LOC_Os02g52550 | Os02g0763000 | OsCNR1, TGW2, OsFWL1 | Detail |
| C2H2g00538 | 2:29,415,549-29,416,080 | + | C1H2g21759 | - | - | - | - | Detail |
| C2H2g18956 | 2:29,419,129-29,422,357 | + | C1H2g09761 | CX2g024148 | LOC_Os02g52560 | Os02g0763200 | - | Detail |
| C2H2g03175 | 2:29,423,273-29,426,274 | + | C1H2g15844 | CX2g024148 | LOC_Os02g52590 | Os02g0763800 | - | Detail |
| C2H2g23310 | 2:29,426,521-29,426,997 | + | C1H2g15324 | - | LOC_Os02g52610 | Os02g0763900 | - | Detail |
| C2H2g02605 | 2:29,429,194-29,432,334 | + | C1H2g26295 | CX2g023343 | LOC_Os02g52610 | Os02g0763900 | - | Detail |
| C2H2g18172 | 2:29,435,564-29,438,153 | + | C1H2g14291 | CX2g019855 | LOC_Os02g52630 | Os02g0764200 | - | Detail |
| C2H2g07475 | 2:29,442,236-29,444,534 | + | C1H2g16896 | CX2g023343 | LOC_Os02g52640 | Os02g0764400 | - | Detail |
| C2H2g26785 | 2:29,444,959-29,446,785 | - | C1H2g16728 | CX2g022219 | LOC_Os02g52650 | Os02g0764500 | - | Detail |
| C2H2g22917 | 2:29,448,988-29,449,743 | - | C1H2g23870 | CX2g021656 | LOC_Os02g52670 | Os02g0764700 | OsERF103 | Detail |
| C2H2g26543 | 2:29,462,389-29,463,967 | + | C1H2g10581 | CX2g018991 | LOC_Os02g52700 | Os02g0765400 | Amy1C | Detail |
| C2H2g29404 | 2:29,466,319-29,467,913 | - | C1H2g08973 | CX2g021489 | LOC_Os02g52710 | Os02g0765600 | AMY1A, Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A | Detail |
| C2H2g24763 | 2:29,471,454-29,472,131 | - | C1H2g26635 | CX2g019501 | LOC_Os02g52720 | Os02g0765800 | - | Detail |
| C2H2g20003 | 2:29,474,844-29,478,669 | - | C1H2g13987 | CX2g022397 | LOC_Os02g52744 | Os02g0766000 | - | Detail |
| C2H2g16702 | 2:29,485,155-29,485,984 | + | C1H2g23770 | CX2g019269 | LOC_Os02g52770 | Os02g0766600 | - | Detail |
| C2H2g14916 | 2:29,487,761-29,492,896 | - | C1H2g16420 | CX2g021391 | LOC_Os02g52780 | Os02g0766700 | BZIP23, OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |