| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g20863 | 5:20,315,791-20,319,332 | - | C2H5g01889 | CX5g039451 | LOC_Os05g42300 | Os05g0502800 | - | Detail |
| C1H5g12553 | 5:20,322,586-20,323,047 | + | C2H5g24320 | CX5g038016 | - | - | - | Detail |
| C1H5g02982 | 5:20,327,590-20,328,224 | - | C2H5g17995 | - | - | - | - | Detail |
| C1H5g23445 | 5:20,329,894-20,335,922 | - | C2H5g12051 | CX5g036854 | LOC_Os05g42330 | Os05g0503000 | - | Detail |
| C1H5g08819 | 5:20,338,894-20,339,802 | + | C2H5g11517 | CX5g038805 | LOC_Os05g42340 | Os05g0503100 | - | Detail |
| C1H5g25114 | 5:20,341,511-20,346,507 | - | C2H5g22444 | CX5g039611 | LOC_Os05g42350 | Os05g0503300 | - | Detail |
| C1H5g14084 | 5:20,348,141-20,349,559 | - | C2H5g05864 | - | LOC_Os05g42360 | - | - | Detail |
| C1H5g03299 | 5:20,396,339-20,398,263 | - | C2H5g04107 | CX5g040265 | LOC_Os05g43030 | Os05g0505900 | - | Detail |
| C1H5g03689 | 5:20,406,081-20,408,331 | + | C2H5g04456 | CX5g037777 | LOC_Os05g43040 | Os05g0506000 | - | Detail |
| C1H5g13929 | 5:20,409,244-20,410,298 | - | C2H5g11826 | CX5g039788 | LOC_Os05g43050 | Os05g0345700 | - | Detail |
| C1H5g16325 | 5:20,412,281-20,423,297 | + | C2H5g03697 | CX5g037317 | LOC_Os05g43060 | Os05g0506200 | - | Detail |
| C1H5g14740 | 5:20,431,862-20,433,709 | - | C2H5g00054 | CX5g038198 | LOC_Os05g43090 | Os05g0506450 | - | Detail |
| C1H5g02333 | 5:20,434,671-20,437,027 | - | C2H5g02904 | CX5g038198 | LOC_Os05g43100 | Os05g0506600 | - | Detail |
| C1H5g15254 | 5:20,449,296-20,449,945 | - | C2H5g15132 | CX5g038198 | LOC_Os05g43100 | Os05g0506500 | - | Detail |
| C1H5g17334 | 5:20,451,746-20,454,793 | - | C2H5g18861 | CX5g038198 | LOC_Os05g43110 | Os05g0506450 | - | Detail |
| C1H5g04181 | 5:20,458,092-20,460,585 | - | C2H5g12001 | CX5g038198 | LOC_Os05g43120 | Os05g0506800 | - | Detail |
| C1H5g14528 | 5:20,462,882-20,464,726 | - | C2H5g02931 | CX5g039806 | LOC_Os05g43130 | Os05g0506900 | - | Detail |
| C1H5g19105 | 5:20,469,228-20,469,719 | + | C2H5g18462 | - | LOC_Os05g43140 | Os05g0507000 | - | Detail |
| C1H5g01942 | 5:20,471,596-20,472,376 | + | - | - | - | - | - | Detail |
| C1H5g16549 | 5:20,473,368-20,477,672 | + | C2H5g14601 | CX5g038837 | LOC_Os05g43170 | Os05g0507300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g12443 | 3:5,464,485-5,475,655 | - | C1H3g16227 | CX3g029221 | LOC_Os03g11734 | Os03g0216700 | OsFRDL1 | Detail |
| C2H3g18755 | 3:5,482,141-5,484,964 | + | C1H3g24567 | CX3g029021 | LOC_Os03g11760 | Os03g0216800 | - | Detail |
| C2H3g21216 | 3:5,489,324-5,493,700 | + | C1H3g18611 | CX3g025795 | LOC_Os03g11770 | Os03g0216900 | - | Detail |
| C2H3g13077 | 3:5,494,224-5,494,622 | - | C1H3g15471 | CX3g025145 | LOC_Os03g11780 | Os03g0217000 | - | Detail |
| C2H3g17874 | 3:5,498,744-5,504,625 | + | C1H3g25970 | CX3g026533 | LOC_Os03g11890 | Os03g0218300 | - | Detail |
| C2H3g10730 | 3:5,505,014-5,509,299 | - | C1H3g04450 | CX3g031320 | LOC_Os03g11900 | Os03g0218400 | OsMST4 | Detail |
| C2H3g22152 | 3:5,514,907-5,518,091 | - | C1H3g10632 | CX3g030309 | LOC_Os03g11910 | Os03g0218500 | - | Detail |
| C2H3g13924 | 3:5,534,286-5,537,026 | + | C1H3g06308 | CX3g025032 | LOC_Os03g11950 | Os03g0219100 | OsSec14-26 | Detail |
| C2H3g24481 | 3:5,540,547-5,543,282 | - | C1H3g24825 | CX3g027163 | LOC_Os03g11960 | Os03g0219200 | OsCSD3 | Detail |
| C2H3g03285 | 3:5,543,764-5,547,541 | - | C1H3g11590 | CX3g028374 | LOC_Os03g11970 | Os03g0219300 | - | Detail |
| C2H3g25818 | 3:5,548,401-5,551,001 | - | C1H3g20877 | CX3g028318 | LOC_Os03g11980 | Os03g0219400 | - | Detail |
| C2H3g26156 | 3:5,552,006-5,552,314 | + | C1H3g14036 | CX3g029685 | LOC_Os03g11990 | Os03g0219500 | - | Detail |
| C2H3g18310 | 3:5,554,652-5,557,006 | - | C1H3g26472 | CX3g028368 | LOC_Os03g12000 | Os03g0219700 | - | Detail |
| C2H3g00756 | 3:5,559,765-5,561,920 | + | C1H3g15777 | CX3g026437 | LOC_Os03g12010 | - | - | Detail |
| C2H3g05450 | 3:5,564,233-5,566,402 | + | C1H3g13535 | CX3g028610 | LOC_Os03g12020 | Os03g0219900 | - | Detail |
| C2H3g23972 | 3:5,571,435-5,573,474 | - | C1H3g10915 | CX3g026270 | LOC_Os03g12030 | Os03g0220100 | WSL4, CER6/CUT1, CER6, CUT1, OsCER6 | Detail |
| C2H3g23561 | 3:5,594,270-5,597,015 | + | C1H3g01618 | CX3g025137 | LOC_Os03g12110 | Os03g0221200 | - | Detail |
| C2H3g25327 | 3:5,597,584-5,605,170 | - | C1H3g06610 | CX3g025281 | LOC_Os03g12120 | Os03g0221300 | - | Detail |
| C2H3g25299 | 3:5,608,099-5,612,075 | + | C1H3g09947 | CX3g028100 | LOC_Os03g12140 | Os03g0221500 | - | Detail |
| C2H3g19033 | 3:5,615,133-5,617,670 | + | C1H3g29297 | CX3g026372 | LOC_Os03g12150 | Os03g0221700 | SDRLK-9 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |