| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g22889 | 5:20,193,626-20,195,099 | + | C2H5g10132 | CX5g039781 | LOC_Os05g42060 | Os05g0500000 | - | Detail |
| C1H5g23324 | 5:20,201,353-20,202,786 | + | C2H5g07901 | CX5g040913 | LOC_Os05g42070 | Os05g0500200 | - | Detail |
| C1H5g11073 | 5:20,204,675-20,205,667 | - | C2H5g04270 | CX5g038191 | - | Os05g0500300 | - | Detail |
| C1H5g01590 | 5:20,206,956-20,207,981 | - | C2H5g04976 | CX5g037904 | LOC_Os05g42100 | Os05g0500400 | - | Detail |
| C1H5g23905 | 5:20,210,317-20,210,616 | - | C2H5g17368 | CX5g039175 | LOC_Os05g42110 | Os05g0500450 | - | Detail |
| C1H5g08894 | 5:20,211,108-20,212,502 | + | C2H5g28908 | CX5g040012 | LOC_Os05g42120 | Os05g0500500 | - | Detail |
| C1H5g00178 | 5:20,214,844-20,216,103 | + | C2H5g15260 | CX5g040288 | LOC_Os05g42130 | Os05g0500600 | - | Detail |
| C1H5g22483 | 5:20,216,624-20,217,325 | + | C2H5g27415 | CX5g039601 | LOC_Os05g42140 | Os05g0500700 | - | Detail |
| C1H5g12028 | 5:20,230,357-20,232,728 | - | C2H5g14428 | CX5g037712 | LOC_Os05g42150 | Os05g0500900 | GH3.4 | Detail |
| C1H5g02940 | 5:20,247,560-20,247,793 | + | C2H5g30517 | CX5g038629 | LOC_Os05g42180 | Os05g0501200 | OsbHLH067 | Detail |
| C1H5g11642 | 5:20,247,889-20,248,257 | + | C2H5g05470 | CX5g038629 | LOC_Os05g42180 | Os05g0501200 | OsbHLH067 | Detail |
| C1H5g28555 | 5:20,253,505-20,256,978 | - | C2H5g14062 | CX5g037320 | LOC_Os05g42190 | Os05g0501300 | - | Detail |
| C1H5g24557 | 5:20,258,763-20,264,504 | + | C2H5g07451 | CX5g040051 | LOC_Os05g42210 | Os05g0501400 | SDRLK-4 | Detail |
| C1H5g06747 | 5:20,268,524-20,271,557 | + | C2H5g07655 | CX5g041088 | LOC_Os05g42220 | Os05g0501600 | - | Detail |
| C1H5g31272 | 5:20,272,672-20,273,560 | + | C2H5g05999 | CX5g040415 | LOC_Os05g42230 | Os05g0501700 | - | Detail |
| C1H5g16795 | 5:20,278,421-20,279,685 | - | C2H5g01142 | CX5g039962 | LOC_Os05g42240 | Os05g0501800 | OsSPL | Detail |
| C1H5g26421 | 5:20,288,965-20,293,798 | + | C2H5g13735 | CX5g038769 | LOC_Os05g42250 | Os05g0502000 | OsCNGC16 | Detail |
| C1H5g17054 | 5:20,300,106-20,302,659 | + | C2H5g18831 | CX5g040519 | LOC_Os05g42270 | Os05g0502200 | - | Detail |
| C1H5g06217 | 5:20,305,401-20,309,049 | - | C2H5g21255 | CX5g040478 | LOC_Os05g42280 | Os05g0502500 | - | Detail |
| C1H5g22762 | 5:20,311,319-20,312,867 | + | C2H5g19742 | CX5g037515 | LOC_Os05g42290 | Os05g0502700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g24976 | 3:1,372,275-1,376,010 | - | C1H3g25549 | CX3g029868 | LOC_Os03g03650 | Os03g0128500 | OsPolδ2 | Detail |
| C2H3g12077 | 3:1,387,255-1,391,634 | + | C1H3g29800 | CX3g027339 | LOC_Os03g03660 | Os03g0128700 | OsCPK7, OsCDPK13, OsCDPK1, OsCDPK11, OsCDPK12 | Detail |
| C2H3g19950 | 3:1,392,232-1,393,624 | - | C1H3g05509 | CX3g030927 | LOC_Os03g03670 | Os03g0128800 | - | Detail |
| C2H3g30344 | 3:1,394,053-1,399,749 | + | C1H3g30034 | CX3g026694 | LOC_Os03g03680 | Os03g0128932 | OsAZT3 | Detail |
| C2H3g21860 | 3:1,404,013-1,406,291 | + | C1H3g26756 | CX3g026791 | LOC_Os03g03690 | Os03g0129000 | OsPIG-F, PIG-F | Detail |
| C2H3g23213 | 3:1,406,683-1,410,322 | - | C1H3g08238 | CX3g030210 | LOC_Os03g03700 | Os03g0129100 | - | Detail |
| C2H3g26117 | 3:1,414,790-1,423,165 | - | C1H3g14096 | CX3g028820 | LOC_Os03g03710 | Os03g0129200 | - | Detail |
| C2H3g26797 | 3:1,423,761-1,427,115 | + | C1H3g27982 | CX3g028073 | LOC_Os03g03720 | Os03g0129300 | - | Detail |
| C2H3g27426 | 3:1,428,759-1,429,260 | + | C1H3g08454 | CX3g030443 | - | Os03g0129400 | - | Detail |
| C2H3g07876 | 3:1,429,591-1,432,220 | - | C1H3g20373 | CX3g026210 | LOC_Os03g03730 | Os03g0129800 | - | Detail |
| C2H3g29721 | 3:1,433,820-1,434,149 | - | C1H3g01611 | CX3g026524 | LOC_Os03g03760 | - | - | Detail |
| C2H3g13057 | 3:1,434,301-1,438,600 | - | C1H3g14716 | CX3g026524 | LOC_Os03g03760 | Os03g0624000 | - | Detail |
| C2H3g09690 | 3:1,449,674-1,450,205 | - | - | - | - | - | - | Detail |
| C2H3g05832 | 3:1,450,869-1,451,201 | - | C1H3g30382 | CX3g030654 | LOC_Os03g03770 | Os03g0129900 | - | Detail |
| C2H3g07821 | 3:1,470,488-1,472,663 | + | C1H3g27546 | CX3g028774 | LOC_Os03g03790 | Os03g0130100 | OsCNL1 | Detail |
| C2H3g09589 | 3:1,475,498-1,476,222 | + | C1H3g09567 | CX3g030766 | LOC_Os03g22700 | - | - | Detail |
| C2H3g10593 | 3:1,478,539-1,478,893 | + | C1H3g01006 | CX3g027416 | LOC_Os03g03810 | Os03g0130300 | OsDEF8 | Detail |
| C2H3g18638 | 3:1,480,046-1,483,365 | + | C1H3g27010 | CX3g029936 | LOC_Os03g03820 | Os03g0130400 | - | Detail |
| C2H3g06449 | 3:1,483,681-1,491,487 | - | C1H3g11205 | CX3g030536 | LOC_Os03g03830 | Os03g0130500 | - | Detail |
| C2H3g20859 | 3:1,495,493-1,500,360 | - | C1H3g17616 | CX3g029509 | LOC_Os03g03860 | Os03g0130700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |