| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g31359 | 1:23,429,791-23,433,501 | + | C2H1g01762 | CX1g000139 | LOC_Os01g46080 | Os01g0650200 | - | Detail |
| C1H1g08740 | 1:23,437,396-23,440,160 | + | C2H1g15449 | CX1g000139 | LOC_Os01g46120 | Os01g0649900 | - | Detail |
| C1H1g17590 | 1:23,441,760-23,444,525 | + | C2H1g17756 | CX1g000139 | LOC_Os01g46169 | Os01g0650200 | - | Detail |
| C1H1g09220 | 1:23,448,577-23,452,163 | + | C2H1g22533 | CX1g000139 | LOC_Os01g46080 | Os01g0650100 | - | Detail |
| C1H1g13513 | 1:23,466,225-23,467,705 | + | C2H1g08216 | CX1g000139 | LOC_Os01g46210 | Os01g0650900 | - | Detail |
| C1H1g06575 | 1:23,470,213-23,472,212 | + | C2H1g09979 | CX1g000139 | LOC_Os01g46220 | Os01g0651000 | - | Detail |
| C1H1g04779 | 1:23,473,184-23,474,980 | + | C2H1g01586 | CX1g001532 | LOC_Os01g46230 | Os01g0651100 | PPR035 | Detail |
| C1H1g29471 | 1:23,477,044-23,485,443 | + | C2H1g26984 | CX1g003640 | LOC_Os01g46240 | Os01g0652300 | - | Detail |
| C1H1g11444 | 1:23,485,465-23,488,921 | + | - | - | - | - | - | Detail |
| C1H1g26553 | 1:23,488,997-23,491,689 | + | C2H1g13112 | CX1g000139 | LOC_Os01g46260 | Os01g0651300 | - | Detail |
| C1H1g00569 | 1:23,493,361-23,493,710 | + | C2H1g17550 | CX1g000139 | LOC_Os01g42730 | Os01g0651400 | - | Detail |
| C1H1g03142 | 1:23,503,930-23,506,934 | + | C2H1g07057 | CX1g003640 | LOC_Os01g46290 | Os01g0651800 | - | Detail |
| C1H1g03164 | 1:23,530,145-23,535,205 | + | C2H1g15870 | CX1g002121 | LOC_Os01g46340 | Os01g0651932 | - | Detail |
| C1H1g23579 | 1:23,535,323-23,539,393 | - | C2H1g17253 | CX1g005058 | LOC_Os01g46350 | Os01g0652100 | - | Detail |
| C1H1g19278 | 1:23,552,641-23,554,621 | - | C2H1g20530 | CX1g003640 | LOC_Os01g46370 | Os01g0652300 | - | Detail |
| C1H1g27938 | 1:23,560,449-23,564,328 | + | C2H1g30160 | CX1g004512 | LOC_Os01g46380 | Os01g0652600 | - | Detail |
| C1H1g21740 | 1:23,572,228-23,574,071 | - | C2H1g24945 | CX1g002261 | LOC_Os01g46400 | Os01g0652800 | - | Detail |
| C1H1g26083 | 1:23,583,037-23,584,322 | - | C2H1g19675 | CX1g003955 | LOC_Os01g46410 | Os01g0653100 | OsXyBAT2 | Detail |
| C1H1g09813 | 1:23,591,431-23,591,667 | - | C2H1g26916 | CX1g002811 | LOC_Os01g46440 | Os01g0653300 | - | Detail |
| C1H1g02529 | 1:23,597,469-23,598,544 | - | C2H1g26897 | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g15731 | 4:19,800,017-19,800,238 | + | C1H4g20972 | CX4g033651 | LOC_Os04g38690 | Os04g0460400 | CASP5, OsCASP5 | Detail |
| C2H4g19243 | 4:19,800,307-19,800,779 | + | C1H4g20972 | CX4g033651 | LOC_Os04g38690 | Os04g0460400 | CASP5, OsCASP5 | Detail |
| C2H4g29420 | 4:19,803,619-19,805,089 | + | C1H4g26714 | CX4g035215 | LOC_Os04g38700 | Os04g0460500 | - | Detail |
| C2H4g09182 | 4:19,829,631-19,831,251 | + | C1H4g00856 | CX4g035794 | LOC_Os04g38720 | Os04g0460600 | NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2 | Detail |
| C2H4g21139 | 4:19,837,532-19,840,434 | - | C1H4g10275 | CX4g031747 | LOC_Os04g38730 | - | - | Detail |
| C2H4g04335 | 4:19,858,744-19,860,847 | + | C1H4g16192 | CX4g033056 | LOC_Os04g38740 | Os04g0461000 | Os2R_MYB43 | Detail |
| C2H4g17531 | 4:19,862,553-19,864,169 | + | C1H4g01178 | CX4g035604 | LOC_Os04g38750 | Os04g0461100 | - | Detail |
| C2H4g02198 | 4:19,876,032-19,877,088 | + | C1H4g10260 | CX4g034462 | LOC_Os04g38770 | Os04g0461300 | - | Detail |
| C2H4g30121 | 4:19,883,069-19,894,288 | - | C1H4g16630 | - | - | - | - | Detail |
| C2H4g25911 | 4:19,885,112-19,885,726 | + | C1H4g10260 | CX4g035338 | LOC_Os04g38780 | Os04g0304400 | OsMADS25 | Detail |
| C2H4g15152 | 4:19,898,581-19,899,725 | - | C1H4g09833 | CX4g032154 | - | Os04g0461600 | - | Detail |
| C2H4g01881 | 4:19,905,241-19,905,459 | + | - | - | - | - | - | Detail |
| C2H4g04073 | 4:19,907,187-19,910,407 | - | C1H4g11139 | CX4g033096 | LOC_Os04g38810 | Os04g0461800 | - | Detail |
| C2H4g14143 | 4:19,912,471-19,919,721 | - | C1H4g20046 | CX4g035671 | LOC_Os04g38850 | Os04g0462300 | - | Detail |
| C2H4g25655 | 4:19,917,111-19,917,873 | + | C1H4g28167 | CX4g034495 | LOC_Os04g38840 | Os04g0462200 | - | Detail |
| C2H4g21045 | 4:19,920,735-19,922,769 | - | C1H4g07343 | CX4g031760 | LOC_Os04g38860 | Os04g0462400 | OsLHT4 | Detail |
| C2H4g15046 | 4:19,927,001-19,930,499 | + | C1H4g23173 | CX4g031560 | LOC_Os04g38870 | Os04g0462500 | - | Detail |
| C2H4g09025 | 4:19,931,200-19,933,250 | - | C1H4g05269 | CX4g033001 | LOC_Os04g38880 | Os04g0462600 | - | Detail |
| C2H4g27908 | 4:19,939,601-19,940,455 | - | C1H4g30627 | CX4g034025 | LOC_Os04g38900 | Os04g0462900 | - | Detail |
| C2H4g10984 | 4:19,942,582-19,945,149 | - | C1H4g28569 | CX4g032418 | LOC_Os04g38910 | Os04g0463000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |