| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g31359 | 1:23,429,791-23,433,501 | + | C2H1g01762 | CX1g000139 | LOC_Os01g46080 | Os01g0650200 | - | Detail |
| C1H1g08740 | 1:23,437,396-23,440,160 | + | C2H1g15449 | CX1g000139 | LOC_Os01g46120 | Os01g0649900 | - | Detail |
| C1H1g17590 | 1:23,441,760-23,444,525 | + | C2H1g17756 | CX1g000139 | LOC_Os01g46169 | Os01g0650200 | - | Detail |
| C1H1g09220 | 1:23,448,577-23,452,163 | + | C2H1g22533 | CX1g000139 | LOC_Os01g46080 | Os01g0650100 | - | Detail |
| C1H1g13513 | 1:23,466,225-23,467,705 | + | C2H1g08216 | CX1g000139 | LOC_Os01g46210 | Os01g0650900 | - | Detail |
| C1H1g06575 | 1:23,470,213-23,472,212 | + | C2H1g09979 | CX1g000139 | LOC_Os01g46220 | Os01g0651000 | - | Detail |
| C1H1g04779 | 1:23,473,184-23,474,980 | + | C2H1g01586 | CX1g001532 | LOC_Os01g46230 | Os01g0651100 | PPR035 | Detail |
| C1H1g29471 | 1:23,477,044-23,485,443 | + | C2H1g26984 | CX1g003640 | LOC_Os01g46240 | Os01g0652300 | - | Detail |
| C1H1g11444 | 1:23,485,465-23,488,921 | + | - | - | - | - | - | Detail |
| C1H1g26553 | 1:23,488,997-23,491,689 | + | C2H1g13112 | CX1g000139 | LOC_Os01g46260 | Os01g0651300 | - | Detail |
| C1H1g00569 | 1:23,493,361-23,493,710 | + | C2H1g17550 | CX1g000139 | LOC_Os01g42730 | Os01g0651400 | - | Detail |
| C1H1g03142 | 1:23,503,930-23,506,934 | + | C2H1g07057 | CX1g003640 | LOC_Os01g46290 | Os01g0651800 | - | Detail |
| C1H1g03164 | 1:23,530,145-23,535,205 | + | C2H1g15870 | CX1g002121 | LOC_Os01g46340 | Os01g0651932 | - | Detail |
| C1H1g23579 | 1:23,535,323-23,539,393 | - | C2H1g17253 | CX1g005058 | LOC_Os01g46350 | Os01g0652100 | - | Detail |
| C1H1g19278 | 1:23,552,641-23,554,621 | - | C2H1g20530 | CX1g003640 | LOC_Os01g46370 | Os01g0652300 | - | Detail |
| C1H1g27938 | 1:23,560,449-23,564,328 | + | C2H1g30160 | CX1g004512 | LOC_Os01g46380 | Os01g0652600 | - | Detail |
| C1H1g21740 | 1:23,572,228-23,574,071 | - | C2H1g24945 | CX1g002261 | LOC_Os01g46400 | Os01g0652800 | - | Detail |
| C1H1g26083 | 1:23,583,037-23,584,322 | - | C2H1g19675 | CX1g003955 | LOC_Os01g46410 | Os01g0653100 | OsXyBAT2 | Detail |
| C1H1g09813 | 1:23,591,431-23,591,667 | - | C2H1g26916 | CX1g002811 | LOC_Os01g46440 | Os01g0653300 | - | Detail |
| C1H1g02529 | 1:23,597,469-23,598,544 | - | C2H1g26897 | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g20617 | 3:29,621,352-29,624,320 | - | C1H3g23563 | CX3g025581 | LOC_Os03g56790 | Os03g0780400 | OsADF2 | Detail |
| C2H3g18001 | 3:29,626,391-29,631,401 | + | C1H3g23600 | CX3g026219 | LOC_Os03g56800 | Os03g0780500 | - | Detail |
| C2H3g14864 | 3:29,631,995-29,635,002 | + | C1H3g17595 | CX3g030860 | LOC_Os03g56810 | Os03g0780600 | - | Detail |
| C2H3g09626 | 3:29,635,110-29,639,573 | + | - | - | - | - | - | Detail |
| C2H3g16433 | 3:29,641,852-29,643,226 | + | C1H3g26439 | CX3g026170 | LOC_Os03g56820 | Os03g0780800 | - | Detail |
| C2H3g03306 | 3:29,644,727-29,647,250 | - | C1H3g14922 | CX3g028624 | LOC_Os03g56830 | Os03g0780900 | - | Detail |
| C2H3g10423 | 3:29,649,468-29,652,876 | - | C1H3g04528 | CX3g030035 | LOC_Os03g56840 | Os03g0781000 | - | Detail |
| C2H3g00662 | 3:29,654,033-29,656,588 | + | C1H3g00697 | CX3g028006 | LOC_Os03g56850 | Os03g0781100 | - | Detail |
| C2H3g16006 | 3:29,658,702-29,659,389 | - | C1H3g00675 | CX3g031346 | LOC_Os03g56860 | Os03g0781300 | - | Detail |
| C2H3g09130 | 3:29,660,283-29,662,126 | - | C1H3g13066 | CX3g029784 | LOC_Os03g56869 | Os03g0781400 | - | Detail |
| C2H3g00286 | 3:29,664,701-29,668,083 | - | C1H3g04826 | CX3g025012 | LOC_Os03g56890 | Os03g0781600 | - | Detail |
| C2H3g19846 | 3:29,687,604-29,690,478 | + | C1H3g18147 | CX3g026212 | LOC_Os03g56950 | Os03g0782500 | PIL13, OsPIL1, OsPIL13, OsbHLH152 | Detail |
| C2H3g26278 | 3:29,697,094-29,699,728 | - | C1H3g10536 | CX3g026808 | LOC_Os03g56960 | Os03g0782900 | - | Detail |
| C2H3g17813 | 3:29,699,849-29,705,182 | + | C1H3g29435 | CX3g030659 | LOC_Os03g56970 | Os03g0783000 | - | Detail |
| C2H3g21267 | 3:29,717,486-29,720,085 | + | C1H3g09935 | - | LOC_Os03g56490 | Os03g0783100 | - | Detail |
| C2H3g27771 | 3:29,721,321-29,721,893 | + | C1H3g22666 | - | LOC_Os03g57010 | Os03g0783100 | - | Detail |
| C2H3g11026 | 3:29,763,753-29,765,490 | - | C1H3g16399 | CX3g026130 | LOC_Os03g57040 | Os03g0783700 | - | Detail |
| C2H3g20647 | 3:29,771,887-29,775,333 | + | C1H3g28995 | CX3g025168 | LOC_Os03g57070 | Os03g0784000 | - | Detail |
| C2H3g12289 | 3:29,780,651-29,782,256 | - | C1H3g19825 | CX3g027646 | LOC_Os03g57080 | Os03g0784100 | - | Detail |
| C2H3g18782 | 3:29,791,176-29,793,796 | - | C1H3g16412 | - | LOC_Os03g57090 | Os03g0784300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |