| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g31359 | 1:23,429,791-23,433,501 | + | C2H1g01762 | CX1g000139 | LOC_Os01g46080 | Os01g0650200 | - | Detail |
| C1H1g08740 | 1:23,437,396-23,440,160 | + | C2H1g15449 | CX1g000139 | LOC_Os01g46120 | Os01g0649900 | - | Detail |
| C1H1g17590 | 1:23,441,760-23,444,525 | + | C2H1g17756 | CX1g000139 | LOC_Os01g46169 | Os01g0650200 | - | Detail |
| C1H1g09220 | 1:23,448,577-23,452,163 | + | C2H1g22533 | CX1g000139 | LOC_Os01g46080 | Os01g0650100 | - | Detail |
| C1H1g13513 | 1:23,466,225-23,467,705 | + | C2H1g08216 | CX1g000139 | LOC_Os01g46210 | Os01g0650900 | - | Detail |
| C1H1g06575 | 1:23,470,213-23,472,212 | + | C2H1g09979 | CX1g000139 | LOC_Os01g46220 | Os01g0651000 | - | Detail |
| C1H1g04779 | 1:23,473,184-23,474,980 | + | C2H1g01586 | CX1g001532 | LOC_Os01g46230 | Os01g0651100 | PPR035 | Detail |
| C1H1g29471 | 1:23,477,044-23,485,443 | + | C2H1g26984 | CX1g003640 | LOC_Os01g46240 | Os01g0652300 | - | Detail |
| C1H1g11444 | 1:23,485,465-23,488,921 | + | - | - | - | - | - | Detail |
| C1H1g26553 | 1:23,488,997-23,491,689 | + | C2H1g13112 | CX1g000139 | LOC_Os01g46260 | Os01g0651300 | - | Detail |
| C1H1g00569 | 1:23,493,361-23,493,710 | + | C2H1g17550 | CX1g000139 | LOC_Os01g42730 | Os01g0651400 | - | Detail |
| C1H1g03142 | 1:23,503,930-23,506,934 | + | C2H1g07057 | CX1g003640 | LOC_Os01g46290 | Os01g0651800 | - | Detail |
| C1H1g03164 | 1:23,530,145-23,535,205 | + | C2H1g15870 | CX1g002121 | LOC_Os01g46340 | Os01g0651932 | - | Detail |
| C1H1g23579 | 1:23,535,323-23,539,393 | - | C2H1g17253 | CX1g005058 | LOC_Os01g46350 | Os01g0652100 | - | Detail |
| C1H1g19278 | 1:23,552,641-23,554,621 | - | C2H1g20530 | CX1g003640 | LOC_Os01g46370 | Os01g0652300 | - | Detail |
| C1H1g27938 | 1:23,560,449-23,564,328 | + | C2H1g30160 | CX1g004512 | LOC_Os01g46380 | Os01g0652600 | - | Detail |
| C1H1g21740 | 1:23,572,228-23,574,071 | - | C2H1g24945 | CX1g002261 | LOC_Os01g46400 | Os01g0652800 | - | Detail |
| C1H1g26083 | 1:23,583,037-23,584,322 | - | C2H1g19675 | CX1g003955 | LOC_Os01g46410 | Os01g0653100 | OsXyBAT2 | Detail |
| C1H1g09813 | 1:23,591,431-23,591,667 | - | C2H1g26916 | CX1g002811 | LOC_Os01g46440 | Os01g0653300 | - | Detail |
| C1H1g02529 | 1:23,597,469-23,598,544 | - | C2H1g26897 | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g08146 | 3:25,060,344-25,073,286 | + | C1H3g30763 | CX3g027759 | - | - | - | Detail |
| C2H3g06193 | 3:25,080,310-25,093,249 | - | C1H3g31689 | CX3g025545 | LOC_Os03g48140 | Os03g0686300 | - | Detail |
| C2H3g15650 | 3:25,099,612-25,102,820 | + | C1H3g17077 | CX3g025241 | LOC_Os03g48160 | Os03g0253100 | - | Detail |
| C2H3g12008 | 3:25,104,383-25,108,435 | + | C1H3g31064 | CX3g025276 | LOC_Os03g48170 | Os03g0686900 | FLO6 | Detail |
| C2H3g19404 | 3:25,109,095-25,114,669 | - | C1H3g04074 | CX3g025668 | LOC_Os03g51050 | Os03g0687000 | OsNPF2.4, NPF2.4, OsPTR2, PTR2 | Detail |
| C2H3g17935 | 3:25,127,611-25,131,595 | - | C1H3g27780 | CX3g029198 | LOC_Os03g48190 | Os03g0687200 | - | Detail |
| C2H3g12687 | 3:25,135,284-25,136,030 | - | C1H3g26805 | CX3g025750 | LOC_Os03g48200 | Os03g0687400 | - | Detail |
| C2H3g13078 | 3:25,137,917-25,138,663 | - | C1H3g31647 | CX3g029222 | LOC_Os03g48220 | Os03g0687700 | - | Detail |
| C2H3g02466 | 3:25,140,936-25,141,493 | - | C1H3g02479 | CX3g025750 | LOC_Os03g48225 | Os03g0687800 | - | Detail |
| C2H3g05793 | 3:25,142,535-25,143,269 | - | C1H3g12014 | CX3g028579 | LOC_Os03g48235 | Os03g0688000 | - | Detail |
| C2H3g06136 | 3:25,144,788-25,145,247 | - | C1H3g12256 | CX3g029222 | LOC_Os03g48220 | Os03g0687700 | - | Detail |
| C2H3g19874 | 3:25,146,922-25,151,844 | + | C1H3g24497 | CX3g029090 | LOC_Os03g48260 | Os03g0688200 | - | Detail |
| C2H3g05160 | 3:25,157,608-25,163,002 | + | C1H3g21570 | CX3g025253 | LOC_Os03g48270 | Os03g0688300 | CDPK9, OsCDPK9, OsCPK9 | Detail |
| C2H3g19979 | 3:25,186,796-25,214,847 | + | C1H3g15303 | CX3g027485 | LOC_Os03g48300 | Os03g0689100 | - | Detail |
| C2H3g24844 | 3:25,222,977-25,230,070 | + | C1H3g28879 | CX3g027452 | LOC_Os03g48310 | Os03g0689300 | - | Detail |
| C2H3g06110 | 3:25,231,632-25,235,399 | - | C1H3g09435 | CX3g026383 | LOC_Os03g48380 | Os03g0689900 | - | Detail |
| C2H3g14932 | 3:25,237,216-25,239,557 | + | C1H3g04287 | CX3g027552 | LOC_Os03g48390 | Os03g0690000 | - | Detail |
| C2H3g03020 | 3:25,282,883-25,286,063 | - | C1H3g28354 | CX3g028707 | LOC_Os03g48450 | Os03g0690600 | - | Detail |
| C2H3g18585 | 3:25,290,921-25,294,737 | + | C1H3g15398 | - | LOC_Os03g48471 | Os03g0690700 | - | Detail |
| C2H3g25812 | 3:25,324,182-25,326,537 | - | C1H3g11606 | CX3g027625 | LOC_Os03g48480 | Os03g0691400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |