| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g11255 | 5:19,342,606-19,344,167 | + | C2H5g14285 | CX5g039945 | LOC_Os05g40240 | Os05g0480800 | - | Detail |
| C1H5g24027 | 5:19,351,518-19,354,476 | + | C2H5g11353 | CX5g037040 | LOC_Os05g40260 | Os05g0481000 | - | Detail |
| C1H5g02182 | 5:19,361,852-19,371,211 | + | C2H5g07339 | CX5g038324 | LOC_Os05g40270 | Os05g0481100 | - | Detail |
| C1H5g03756 | 5:19,371,583-19,375,540 | - | C2H5g09907 | CX5g039343 | LOC_Os05g40280 | Os05g0481400 | - | Detail |
| C1H5g03902 | 5:19,387,314-19,390,883 | - | C2H5g20428 | CX5g038848 | LOC_Os05g40290 | Os05g0481500 | - | Detail |
| C1H5g10469 | 5:19,397,817-19,398,361 | + | C2H5g27797 | CX5g036753 | LOC_Os05g40300 | Os05g0481600 | - | Detail |
| C1H5g24805 | 5:19,401,091-19,403,618 | - | C2H5g06900 | CX5g037459 | LOC_Os05g40310 | Os05g0481700 | - | Detail |
| C1H5g08499 | 5:19,405,903-19,407,457 | + | C2H5g25296 | CX5g038701 | LOC_Os05g40320 | Os05g0481800 | - | Detail |
| C1H5g14646 | 5:19,410,985-19,413,294 | - | C2H5g16978 | CX5g037406 | LOC_Os05g40330 | Os05g0481900 | - | Detail |
| C1H5g20454 | 5:19,416,011-19,416,892 | - | C2H5g15740 | CX5g040861 | LOC_Os05g40360 | - | - | Detail |
| C1H5g22811 | 5:19,418,853-19,425,042 | + | C2H2g01315 | CX5g037195 | LOC_Os03g61860 | - | - | Detail |
| C1H5g07154 | 5:19,455,504-19,455,984 | + | C2H5g03648 | CX5g037663 | LOC_Os05g40384 | Os05g0482400 | EUI1, eui1, GA16, 17ox, CYP714D1, EUI, CYP714D1/EUI, LG5 | Detail |
| C1H5g08150 | 5:19,461,940-19,464,121 | + | C2H5g22897 | CX5g037663 | LOC_Os05g40384 | Os05g0482400 | EUI1, eui1, GA16, 17ox, CYP714D1, EUI, CYP714D1/EUI, LG5 | Detail |
| C1H5g11883 | 5:19,465,057-19,465,692 | + | C2H5g02533 | CX5g038624 | LOC_Os05g40400 | Os05g0482501 | - | Detail |
| C1H5g19898 | 5:19,474,299-19,474,571 | - | - | - | - | Os01g0817900 | - | Detail |
| C1H5g01703 | 5:19,474,390-19,478,928 | + | C2H5g19376 | CX5g040561 | LOC_Os05g40410 | Os05g0482600 | - | Detail |
| C1H5g12944 | 5:19,479,056-19,483,746 | - | C2H5g12661 | CX5g037367 | LOC_Os05g40420 | Os05g0482700 | - | Detail |
| C1H5g09268 | 5:19,543,083-19,544,643 | - | C2H5g26553 | CX5g039268 | LOC_Os05g40590 | Os05g0539300 | - | Detail |
| C1H5g23451 | 5:19,545,742-19,547,608 | - | C2H5g23995 | CX5g039268 | LOC_Os05g40610 | Os05g0539300 | - | Detail |
| C1H5g31019 | 5:19,548,410-19,549,771 | + | C2H5g16811 | CX5g039268 | LOC_Os05g40620 | Os05g0539300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g12265 | 3:17,761,916-17,768,943 | - | C1H3g14005 | CX3g028089 | LOC_Os03g34300 | Os03g0454100 | - | Detail |
| C2H3g25407 | 3:17,769,468-17,773,419 | + | - | - | LOC_Os03g34310 | - | - | Detail |
| C2H3g24060 | 3:17,834,168-17,844,265 | + | C1H3g30334 | CX3g029528 | - | Os03g0678400 | - | Detail |
| C2H3g17975 | 3:17,960,208-17,963,228 | + | C1H3g23806 | CX3g026576 | - | Os03g0759000 | - | Detail |
| C2H3g10346 | 3:18,090,172-18,105,947 | - | C1H3g18625 | CX3g027364 | LOC_Os03g35340 | Os03g0554900 | - | Detail |
| C2H3g04971 | 3:18,121,785-18,122,528 | - | C1H3g29658 | CX3g026045 | LOC_Os03g35370 | - | - | Detail |
| C2H3g05979 | 3:18,133,225-18,137,648 | - | C1H3g29570 | - | LOC_Os03g35454 | - | - | Detail |
| C2H3g12208 | 3:18,173,644-18,176,508 | + | C1H3g05847 | CX3g030899 | - | - | - | Detail |
| C2H3g23939 | 3:18,219,475-18,223,831 | + | C1H3g05109 | CX3g026628 | LOC_Os03g35600 | Os03g0556600 | SDRLK-20 | Detail |
| C2H3g16484 | 3:18,270,845-18,271,739 | - | C1H3g27683 | - | LOC_Os03g35620 | - | - | Detail |
| C2H3g10319 | 3:18,271,784-18,272,125 | - | - | CX3g031176 | - | - | - | Detail |
| C2H3g20317 | 3:18,272,142-18,272,912 | - | C1H3g27683 | - | LOC_Os03g35620 | - | - | Detail |
| C2H3g12177 | 3:18,361,798-18,362,366 | + | - | - | - | Os03g0558600 | - | Detail |
| C2H3g08461 | 3:18,633,763-18,634,880 | - | C1H3g18372 | CX3g026625 | LOC_Os03g36439 | Os03g0562200 | - | Detail |
| C2H3g19324 | 3:18,646,026-18,646,409 | - | C1H3g09057 | CX3g025527 | - | Os03g0562200 | - | Detail |
| C2H3g18751 | 3:18,698,011-18,702,063 | + | C1H3g31570 | CX3g030881 | LOC_Os03g36530 | Os03g0563100 | - | Detail |
| C2H3g06195 | 3:18,706,359-18,707,995 | - | C1H3g17857 | CX3g027657 | LOC_Os03g36540 | Os03g0563300 | ELL, OsCHLI | Detail |
| C2H3g17553 | 3:18,721,989-18,724,706 | + | C1H3g29929 | CX3g025994 | LOC_Os03g36560 | Os03g0563600 | - | Detail |
| C2H3g01598 | 3:18,725,336-18,725,832 | + | C1H3g19117 | CX3g025994 | LOC_Os03g36560 | Os03g0563600 | - | Detail |
| C2H3g26291 | 3:18,758,458-18,763,960 | + | C1H3g27327 | CX3g025101 | LOC_Os03g36630 | Os03g0564200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |