| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g01899 | 5:18,875,099-18,877,942 | + | C2H5g18865 | CX5g036944 | LOC_Os05g39310 | Os05g0469600 | Ospdc1 | Detail |
| C1H5g17771 | 5:18,881,373-18,881,975 | + | C2H5g07982 | CX5g040493 | LOC_Os05g39320 | Os05g0469800 | RRJ2, PDC1 | Detail |
| C1H5g02466 | 5:18,881,994-18,883,702 | + | C2H5g08481 | CX5g040493 | LOC_Os05g39320 | Os05g0469800 | RRJ2, PDC1 | Detail |
| C1H5g04421 | 5:18,884,566-18,887,625 | - | C2H5g06883 | CX5g040121 | LOC_Os05g39350 | Os05g0470000 | - | Detail |
| C1H5g12895 | 5:18,902,653-18,904,332 | + | C2H5g07736 | CX5g040095 | LOC_Os05g39380 | Os05g0470700 | - | Detail |
| C1H5g00959 | 5:18,906,484-18,910,205 | - | C2H5g12492 | CX5g040306 | LOC_Os05g39390 | Os05g0470800 | - | Detail |
| C1H5g29961 | 5:18,911,820-18,913,268 | + | C2H5g12700 | CX5g037125 | LOC_Os05g39400 | Os05g0470900 | - | Detail |
| C1H5g06052 | 5:18,913,490-18,917,156 | - | C2H5g26893 | CX5g036882 | LOC_Os05g39410 | Os05g0471000 | - | Detail |
| C1H5g06723 | 5:18,926,606-18,928,072 | - | - | - | - | - | - | Detail |
| C1H5g19650 | 5:18,928,515-18,929,420 | - | C2H5g07606 | - | - | - | - | Detail |
| C1H5g25585 | 5:18,930,484-18,931,254 | - | C2H5g10143 | CX5g037860 | LOC_Os05g39450 | Os05g0471350 | - | Detail |
| C1H5g09380 | 5:18,952,236-18,952,952 | + | C2H5g21299 | CX5g039840 | LOC_Os05g39500 | Os05g0472000 | OsG1L8 | Detail |
| C1H5g12229 | 5:18,966,051-18,970,708 | - | C2H5g25272 | CX5g036972 | LOC_Os05g39520 | Os05g0472200 | - | Detail |
| C1H5g23504 | 5:18,971,619-18,974,005 | - | C2H5g07324 | CX5g038206 | LOC_Os05g39530 | Os05g0472300 | - | Detail |
| C1H5g14755 | 5:18,982,528-18,986,510 | + | C2H5g02174 | CX5g040617 | LOC_Os05g39540 | Os05g0472400 | OsZIP9 | Detail |
| C1H5g09021 | 5:18,990,753-18,992,906 | + | C2H5g12063 | CX5g038639 | LOC_Os05g39560 | Os05g0472700 | OsZIP5 | Detail |
| C1H5g31249 | 5:19,004,727-19,005,392 | - | C2H5g11951 | CX5g039388 | LOC_Os05g39580 | Os05g0473000 | - | Detail |
| C1H5g27001 | 5:19,011,796-19,013,509 | + | - | CX5g036978 | - | - | - | Detail |
| C1H5g23864 | 5:19,014,778-19,016,340 | + | C2H5g19718 | CX5g039698 | LOC_Os05g39590 | Os05g0473300 | - | Detail |
| C1H5g20386 | 5:19,017,849-19,020,703 | + | C2H5g12883 | CX5g039234 | LOC_Os05g39600 | Os05g0473401 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g29234 | 3:9,589,591-9,592,789 | + | C1H3g09918 | CX3g029447 | LOC_Os03g19300 | Os03g0305700 | - | Detail |
| C2H3g25404 | 3:9,593,061-9,594,512 | - | C1H3g15276 | CX3g025751 | LOC_Os03g19310 | Os03g0305800 | - | Detail |
| C2H3g04492 | 3:9,605,909-9,607,258 | + | C1H3g04998 | CX3g029664 | LOC_Os03g19330 | Os03g0306100 | - | Detail |
| C2H3g27650 | 3:9,608,099-9,625,295 | - | C1H3g22410 | CX3g028723 | LOC_Os03g19340 | Os03g0306200 | - | Detail |
| C2H3g07435 | 3:9,627,515-9,639,295 | - | C1H3g02755 | CX3g027549 | LOC_Os03g19350 | Os03g0306400 | - | Detail |
| C2H3g20582 | 3:9,647,619-9,648,140 | + | C1H3g18574 | CX3g026074 | LOC_Os03g19375 | Os03g0239400 | - | Detail |
| C2H3g07871 | 3:9,651,461-9,651,847 | + | C1H3g08148 | CX3g027392 | LOC_Os03g19380 | Os03g0306800 | - | Detail |
| C2H3g26352 | 3:9,652,500-9,654,378 | - | C1H3g23949 | CX3g025960 | LOC_Os03g19390 | Os03g0306900 | - | Detail |
| C2H3g08753 | 3:9,654,788-9,656,681 | + | C1H3g18672 | CX3g025770 | LOC_Os03g19400 | Os03g0307000 | - | Detail |
| C2H3g28158 | 3:9,658,647-9,666,875 | + | C1H3g26919 | CX3g025641 | LOC_Os03g19410 | Os03g0307100 | - | Detail |
| C2H3g27859 | 3:9,667,653-9,668,684 | + | C1H3g07326 | CX3g028955 | LOC_Os03g19427 | Os03g0307300 | - | Detail |
| C2H3g23633 | 3:9,672,964-9,675,855 | - | C1H3g08713 | CX3g027893 | LOC_Os03g19420 | Os03g0307200 | NAS2, OsNAS2 | Detail |
| C2H3g12347 | 3:9,680,537-9,681,031 | + | C1H3g12875 | CX3g027748 | LOC_Os03g19452 | Os03g0307400 | - | Detail |
| C2H3g00214 | 3:9,683,277-9,684,485 | + | C1H3g10945 | CX3g025182 | LOC_Os03g19452 | Os03g0307400 | - | Detail |
| C2H3g27228 | 3:9,684,900-9,688,173 | + | C1H3g01117 | CX3g028724 | LOC_Os03g19462 | - | - | Detail |
| C2H3g27622 | 3:9,690,908-9,693,250 | + | C1H3g07984 | CX3g026010 | LOC_Os03g19470 | Os03g0307700 | - | Detail |
| C2H3g03655 | 3:9,693,645-9,700,852 | - | C1H3g00240 | CX3g031316 | LOC_Os03g19480 | Os03g0307800 | IEZ1, OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718 | Detail |
| C2H3g06844 | 3:9,702,422-9,702,951 | + | C1H3g04726 | CX3g025615 | LOC_Os03g13830 | Os03g0307900 | - | Detail |
| C2H3g23976 | 3:9,704,003-9,706,653 | + | C1H3g19730 | CX3g024948 | LOC_Os03g19500 | Os03g0308000 | SMG3 | Detail |
| C2H3g08220 | 3:9,708,308-9,710,749 | - | C1H3g14154 | CX3g029346 | LOC_Os03g19510 | Os03g0308100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |