| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g16481 | 5:18,611,537-18,619,827 | - | C2H5g23688 | CX5g040696 | LOC_Os05g38730 | Os05g0462600 | - | Detail |
| C1H5g01037 | 5:18,622,921-18,623,232 | - | C2H5g09767 | CX5g037421 | LOC_Os05g39050 | Os05g0462700 | - | Detail |
| C1H5g10476 | 5:18,626,978-18,627,268 | - | C2H5g30583 | CX5g040276 | LOC_Os05g38760 | Os05g0462900 | - | Detail |
| C1H5g21054 | 5:18,629,239-18,631,085 | - | C2H5g09732 | CX5g040728 | LOC_Os05g38770 | Os05g0463000 | - | Detail |
| C1H5g22054 | 5:18,637,478-18,639,855 | - | C2H5g02393 | CX5g041103 | LOC_Os05g38790 | Os05g0463300 | - | Detail |
| C1H5g20773 | 5:18,640,575-18,642,729 | + | C2H5g25319 | CX5g038806 | LOC_Os05g38800 | Os05g0463400 | - | Detail |
| C1H5g12108 | 5:18,645,302-18,650,615 | + | C2H5g01133 | CX5g039882 | LOC_Os05g38810 | Os05g0463500 | - | Detail |
| C1H5g15206 | 5:18,652,322-18,654,936 | - | C2H5g16713 | CX5g040078 | LOC_Os05g38820 | Os05g0463800 | HAP3B, OsHAP3B, OsNF-YB-3, NFYB3 | Detail |
| C1H5g26692 | 5:18,657,382-18,663,699 | - | C2H5g05069 | CX5g038352 | LOC_Os05g38830 | Os05g0463900 | - | Detail |
| C1H5g04043 | 5:18,667,859-18,672,129 | + | C2H5g10683 | CX5g038856 | LOC_Os05g38850 | Os05g0464100 | - | Detail |
| C1H5g03107 | 5:18,677,950-18,678,293 | - | C2H5g06217 | - | - | - | - | Detail |
| C1H5g03378 | 5:18,678,680-18,678,931 | - | C2H5g23544 | - | LOC_Os05g38860 | Os05g0464200 | - | Detail |
| C1H5g03501 | 5:18,683,783-18,690,116 | - | C2H5g00642 | CX5g040041 | LOC_Os05g38930 | Os05g0464300 | - | Detail |
| C1H5g22014 | 5:18,690,613-18,691,151 | - | - | - | - | - | - | Detail |
| C1H5g26266 | 5:18,701,358-18,701,600 | + | C2H5g07866 | CX5g037441 | LOC_Os05g38940 | Os05g0465000 | - | Detail |
| C1H5g29457 | 5:18,707,752-18,715,461 | - | C2H5g20572 | CX5g037912 | LOC_Os05g38950 | Os05g0465100 | - | Detail |
| C1H5g08488 | 5:18,726,667-18,727,444 | - | C2H5g24578 | CX5g039928 | LOC_Os05g38960 | Os05g0465400 | - | Detail |
| C1H5g21670 | 5:18,732,643-18,736,941 | + | C2H5g18626 | CX5g037984 | LOC_Os05g38980 | Os05g0465800 | - | Detail |
| C1H5g02280 | 5:18,743,614-18,744,776 | - | C2H5g30441 | CX5g037393 | LOC_Os05g38990 | Os05g0466100 | - | Detail |
| C1H5g22492 | 5:18,748,091-18,750,817 | - | C2H5g26967 | CX5g037000 | LOC_Os05g39000 | Os05g0466200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g28136 | 1:32,217,833-32,218,510 | - | C1H7g05031 | CX1g003060 | - | - | - | Detail |
| C2H1g07830 | 1:32,220,797-32,224,283 | + | C1H1g31870 | CX1g005066 | LOC_Os01g62860 | Os01g0847600 | ARK1, OsAKR1 | Detail |
| C2H1g21631 | 1:32,226,565-32,230,077 | + | C1H1g07686 | CX1g005497 | LOC_Os01g62870 | Os01g0847700 | AKR2, AKR4C14, OsAKR2 | Detail |
| C2H1g08819 | 1:32,231,970-32,233,842 | + | C1H1g22712 | CX1g005066 | LOC_Os01g62880 | Os01g0847800 | AKR3, OsAKR3 | Detail |
| C2H1g15059 | 1:32,234,598-32,236,562 | - | C1H1g14644 | CX1g003081 | LOC_Os01g62890 | Os01g0847900 | - | Detail |
| C2H1g11514 | 1:32,247,397-32,254,231 | + | C1H1g16705 | CX1g000565 | LOC_Os01g62900 | Os01g0848200 | - | Detail |
| C2H1g22585 | 1:32,260,026-32,264,947 | - | C1H1g00348 | CX1g003256 | LOC_Os01g62920 | Os01g0848400 | RIL1, qSH1, qsh1, qSH-1 | Detail |
| C2H1g19053 | 1:32,297,277-32,299,255 | - | C1H1g22802 | CX1g002502 | LOC_Os01g62950 | Os01g0848700 | - | Detail |
| C2H1g10907 | 1:32,308,279-32,310,199 | + | C1H1g07745 | CX1g003078 | LOC_Os01g62970 | Os01g0848900 | - | Detail |
| C2H1g16292 | 1:32,313,180-32,317,270 | - | C1H1g21425 | CX1g001453 | LOC_Os01g62990 | Os01g0849100 | OsRacGEF1, RacGEF1 | Detail |
| C2H1g12668 | 1:32,324,369-32,325,217 | - | C1H1g13733 | CX1g004136 | LOC_Os01g63010 | Os01g0849600 | - | Detail |
| C2H1g11763 | 1:32,340,477-32,342,423 | + | C1H1g00887 | CX1g001895 | LOC_Os01g63050 | Os01g0850000 | - | Detail |
| C2H1g25333 | 1:32,352,700-32,356,936 | + | C1H1g20419 | CX1g001763 | LOC_Os01g63060 | Os01g0850100 | OsIPCS1 | Detail |
| C2H1g09490 | 1:32,359,711-32,361,993 | - | C1H1g28891 | CX1g000954 | LOC_Os01g63150 | Os01g0850200 | - | Detail |
| C2H1g19322 | 1:32,364,490-32,365,242 | + | C1H1g06998 | CX1g000878 | LOC_Os01g66930 | Os01g0894100 | - | Detail |
| C2H1g01083 | 1:32,371,512-32,372,974 | - | C1H1g23462 | CX1g005718 | LOC_Os01g63160 | Os01g0850400 | Os2R_MYB16 | Detail |
| C2H1g11865 | 1:32,377,914-32,381,808 | + | C1H1g23249 | CX1g004614 | LOC_Os01g63180 | Os01g0850550 | - | Detail |
| C2H1g24131 | 1:32,383,546-32,388,124 | + | C1H1g07266 | CX1g004614 | LOC_Os01g63190 | Os01g0850800 | - | Detail |
| C2H1g10947 | 1:32,390,884-32,393,278 | + | C1H1g27965 | CX1g005774 | LOC_Os01g63200 | Os01g0850800 | - | Detail |
| C2H1g04750 | 1:32,394,297-32,394,947 | + | C1H1g10620 | CX1g003037 | LOC_Os01g63210 | Os01g0850900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |