| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g12434 | 5:17,908,515-17,909,033 | - | C2H5g12625 | CX5g039543 | LOC_Os01g63800 | Os05g0447000 | - | Detail |
| C1H5g27944 | 5:17,914,383-17,920,136 | - | C2H5g25449 | CX5g036820 | LOC_Os05g37470 | Os05g0447200 | - | Detail |
| C1H5g12420 | 5:17,930,866-17,947,371 | - | C2H5g25292 | CX5g036851 | LOC_Os05g37500 | Os05g0447580 | - | Detail |
| C1H5g24273 | 5:17,951,935-17,953,651 | - | C2H5g15162 | CX5g040386 | LOC_Os05g37520 | Os05g0447700 | - | Detail |
| C1H5g03822 | 5:17,965,997-17,970,066 | + | C2H5g11261 | CX5g039030 | LOC_Os05g37600 | Os05g0448300 | - | Detail |
| C1H5g28240 | 5:17,983,558-17,984,565 | + | C2H5g08320 | CX5g039241 | LOC_Os05g37640 | Os05g0448675 | - | Detail |
| C1H5g23210 | 5:17,985,368-17,988,998 | - | C2H5g04056 | CX5g040111 | LOC_Os05g37660 | Os05g0449200 | - | Detail |
| C1H5g08417 | 5:18,002,067-18,005,035 | + | C2H5g04693 | CX5g037128 | LOC_Os05g37690 | Os05g0449500 | OsCOI1b, OsCOI1H, OsFbox260, Os_F0646 | Detail |
| C1H5g11760 | 5:18,007,705-18,008,679 | - | - | - | - | - | - | Detail |
| C1H5g01253 | 5:18,013,707-18,018,179 | + | C2H5g26890 | CX5g040292 | LOC_Os05g37700 | Os05g0449600 | - | Detail |
| C1H5g19157 | 5:18,027,523-18,028,593 | - | C2H5g03693 | CX5g037176 | LOC_Os05g37730 | Os05g0449900 | Os2R_MYB57 | Detail |
| C1H5g14659 | 5:18,054,743-18,055,554 | + | C2H5g27025 | CX5g037869 | LOC_Os05g37780 | Os05g0450300 | - | Detail |
| C1H5g01767 | 5:18,070,624-18,072,612 | + | C2H5g25395 | CX5g039495 | LOC_Os05g37800 | Os05g0450600 | - | Detail |
| C1H5g07138 | 5:18,084,762-18,088,447 | + | C2H5g19098 | CX5g038272 | LOC_Os05g37820 | Os05g0451100 | OsPHT4;2 | Detail |
| C1H5g30639 | 5:18,088,988-18,091,070 | - | C2H5g23791 | CX5g039929 | LOC_Os05g37830 | Os05g0451300 | - | Detail |
| C1H5g02168 | 5:18,102,688-18,106,650 | + | C2H5g16211 | CX5g038310 | LOC_Os05g37880 | Os05g0451900 | - | Detail |
| C1H5g16782 | 5:18,125,599-18,129,272 | + | C2H5g20030 | CX5g039202 | LOC_Os05g37900 | Os05g0452800 | - | Detail |
| C1H5g18778 | 5:18,136,424-18,140,608 | - | C2H5g10306 | CX5g037978 | LOC_Os05g37910 | Os05g0452900 | OsIPCS2 | Detail |
| C1H5g17967 | 5:18,160,153-18,162,777 | - | C2H5g09041 | CX5g039197 | LOC_Os05g37930 | Os05g0453300 | - | Detail |
| C1H5g08818 | 5:18,182,239-18,186,111 | - | C2H5g15966 | CX5g040447 | LOC_Os05g37950 | Os05g0453500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g07837 | 3:12,240,186-12,240,422 | + | C1H3g29038 | - | - | - | - | Detail |
| C2H3g30335 | 3:12,245,811-12,246,437 | + | C1H3g24260 | CX3g028005 | LOC_Os03g24560 | Os03g0360300 | - | Detail |
| C2H3g23651 | 3:12,249,595-12,252,420 | + | C1H3g06016 | CX3g026622 | - | Os03g0202500 | - | Detail |
| C2H3g11576 | 3:12,259,279-12,263,067 | - | C1H3g10908 | CX3g025165 | LOC_Os03g24520 | Os03g0359700 | - | Detail |
| C2H3g27563 | 3:12,267,546-12,271,810 | - | C1H3g04236 | CX3g029301 | LOC_Os03g24580 | Os03g0360500 | - | Detail |
| C2H3g30143 | 3:12,278,164-12,281,650 | + | C1H3g00317 | CX3g028418 | LOC_Os03g24600 | Os03g0360700 | OsMSRB5 | Detail |
| C2H3g18552 | 3:12,283,269-12,286,896 | + | C1H3g00810 | CX3g030502 | LOC_Os03g24610 | Os03g0360800 | - | Detail |
| C2H3g08848 | 3:12,299,353-12,302,445 | + | C1H3g10968 | CX3g028091 | LOC_Os03g24640 | Os03g0361100 | - | Detail |
| C2H3g01009 | 3:12,311,712-12,314,711 | + | C1H3g10968 | CX3g028091 | LOC_Os03g24640 | Os03g0361100 | - | Detail |
| C2H3g10773 | 3:12,322,815-12,324,226 | - | C1H3g06434 | CX3g028227 | LOC_Os03g24650 | Os03g0362500 | - | Detail |
| C2H3g17062 | 3:12,325,139-12,325,479 | - | C1H3g14470 | CX3g028227 | LOC_Os03g24690 | Os03g0361500 | - | Detail |
| C2H3g13152 | 3:12,341,926-12,347,771 | + | C1H3g24193 | CX3g028193 | LOC_Os03g24680 | Os03g0361600 | - | Detail |
| C2H3g10176 | 3:12,373,064-12,373,448 | + | - | - | - | Os05g0380200 | - | Detail |
| C2H3g09511 | 3:12,391,665-12,395,308 | - | C1H3g23561 | - | - | - | - | Detail |
| C2H3g25785 | 3:12,397,990-12,399,111 | - | C1H3g19660 | CX3g028363 | LOC_Os03g24690 | Os03g0361700 | - | Detail |
| C2H3g04211 | 3:12,399,508-12,401,225 | - | C1H3g14470 | CX3g028363 | LOC_Os03g24690 | Os03g0361700 | - | Detail |
| C2H3g13576 | 3:12,417,591-12,417,910 | + | C1H3g24193 | CX3g028193 | LOC_Os03g24710 | Os03g0362032 | - | Detail |
| C2H3g17100 | 3:12,425,984-12,426,265 | + | C1H3g07323 | CX3g028193 | LOC_Os03g24720 | Os03g0362032 | - | Detail |
| C2H3g06450 | 3:12,426,879-12,429,300 | + | C1H3g06434 | CX3g028227 | LOC_Os03g24760 | Os03g0362500 | - | Detail |
| C2H3g08257 | 3:12,442,084-12,446,166 | - | C1H3g26242 | CX3g030811 | LOC_Os03g24650 | Os03g0361700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |