| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g12434 | 5:17,908,515-17,909,033 | - | C2H5g12625 | CX5g039543 | LOC_Os01g63800 | Os05g0447000 | - | Detail |
| C1H5g27944 | 5:17,914,383-17,920,136 | - | C2H5g25449 | CX5g036820 | LOC_Os05g37470 | Os05g0447200 | - | Detail |
| C1H5g12420 | 5:17,930,866-17,947,371 | - | C2H5g25292 | CX5g036851 | LOC_Os05g37500 | Os05g0447580 | - | Detail |
| C1H5g24273 | 5:17,951,935-17,953,651 | - | C2H5g15162 | CX5g040386 | LOC_Os05g37520 | Os05g0447700 | - | Detail |
| C1H5g03822 | 5:17,965,997-17,970,066 | + | C2H5g11261 | CX5g039030 | LOC_Os05g37600 | Os05g0448300 | - | Detail |
| C1H5g28240 | 5:17,983,558-17,984,565 | + | C2H5g08320 | CX5g039241 | LOC_Os05g37640 | Os05g0448675 | - | Detail |
| C1H5g23210 | 5:17,985,368-17,988,998 | - | C2H5g04056 | CX5g040111 | LOC_Os05g37660 | Os05g0449200 | - | Detail |
| C1H5g08417 | 5:18,002,067-18,005,035 | + | C2H5g04693 | CX5g037128 | LOC_Os05g37690 | Os05g0449500 | OsCOI1b, OsCOI1H, OsFbox260, Os_F0646 | Detail |
| C1H5g11760 | 5:18,007,705-18,008,679 | - | - | - | - | - | - | Detail |
| C1H5g01253 | 5:18,013,707-18,018,179 | + | C2H5g26890 | CX5g040292 | LOC_Os05g37700 | Os05g0449600 | - | Detail |
| C1H5g19157 | 5:18,027,523-18,028,593 | - | C2H5g03693 | CX5g037176 | LOC_Os05g37730 | Os05g0449900 | Os2R_MYB57 | Detail |
| C1H5g14659 | 5:18,054,743-18,055,554 | + | C2H5g27025 | CX5g037869 | LOC_Os05g37780 | Os05g0450300 | - | Detail |
| C1H5g01767 | 5:18,070,624-18,072,612 | + | C2H5g25395 | CX5g039495 | LOC_Os05g37800 | Os05g0450600 | - | Detail |
| C1H5g07138 | 5:18,084,762-18,088,447 | + | C2H5g19098 | CX5g038272 | LOC_Os05g37820 | Os05g0451100 | OsPHT4;2 | Detail |
| C1H5g30639 | 5:18,088,988-18,091,070 | - | C2H5g23791 | CX5g039929 | LOC_Os05g37830 | Os05g0451300 | - | Detail |
| C1H5g02168 | 5:18,102,688-18,106,650 | + | C2H5g16211 | CX5g038310 | LOC_Os05g37880 | Os05g0451900 | - | Detail |
| C1H5g16782 | 5:18,125,599-18,129,272 | + | C2H5g20030 | CX5g039202 | LOC_Os05g37900 | Os05g0452800 | - | Detail |
| C1H5g18778 | 5:18,136,424-18,140,608 | - | C2H5g10306 | CX5g037978 | LOC_Os05g37910 | Os05g0452900 | OsIPCS2 | Detail |
| C1H5g17967 | 5:18,160,153-18,162,777 | - | C2H5g09041 | CX5g039197 | LOC_Os05g37930 | Os05g0453300 | - | Detail |
| C1H5g08818 | 5:18,182,239-18,186,111 | - | C2H5g15966 | CX5g040447 | LOC_Os05g37950 | Os05g0453500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g18815 | 2:22,964,531-22,973,156 | - | C1H2g02429 | CX2g019377 | LOC_Os02g40460 | Os02g0617700 | - | Detail |
| C2H2g29974 | 2:22,984,697-22,984,957 | - | - | - | - | - | - | Detail |
| C2H2g26929 | 2:22,988,593-22,990,462 | + | C1H2g22582 | - | LOC_Os02g40490 | - | - | Detail |
| C2H2g04756 | 2:22,994,675-22,996,352 | + | C1H2g02238 | CX2g024840 | LOC_Os02g40500 | Os02g0618100 | OsGRX9, OsGrx_C2.1 | Detail |
| C2H2g05107 | 2:22,997,619-23,000,421 | + | C1H2g04978 | CX2g024264 | LOC_Os02g40510 | Os02g0618200 | OsPRR1, OsTOC1, OsPRR1/OsTOC1 | Detail |
| C2H2g25708 | 2:23,002,033-23,003,523 | - | C1H2g16546 | - | LOC_Os02g40514 | Os02g0618250 | - | Detail |
| C2H2g01262 | 2:23,008,365-23,009,939 | - | C1H2g01139 | CX2g019264 | LOC_Os02g40530 | Os02g0618400 | OsMPS | Detail |
| C2H2g01838 | 2:23,025,294-23,026,795 | + | C1H2g19268 | CX2g024894 | LOC_Os02g40550 | Os02g0618700 | - | Detail |
| C2H2g30582 | 2:23,043,425-23,044,159 | - | - | - | LOC_Os02g40600 | - | - | Detail |
| C2H2g02169 | 2:23,070,406-23,075,582 | - | C1H2g16057 | CX2g023988 | LOC_Os02g40664 | Os02g0619600 | - | Detail |
| C2H2g26987 | 2:23,075,966-23,077,800 | + | C1H2g04094 | - | - | - | - | Detail |
| C2H2g19869 | 2:23,080,364-23,080,630 | - | - | - | - | - | - | Detail |
| C2H2g18142 | 2:23,088,767-23,092,303 | + | C1H2g31349 | CX2g019895 | LOC_Os02g40680 | Os02g0620100 | - | Detail |
| C2H2g10513 | 2:23,093,099-23,093,482 | + | C1H2g31349 | CX2g020219 | LOC_Os02g40690 | Os02g0620200 | - | Detail |
| C2H2g22522 | 2:23,099,083-23,099,503 | + | C1H2g24265 | CX2g023588 | LOC_Os02g40700 | Os02g0620400 | - | Detail |
| C2H2g07540 | 2:23,105,722-23,107,218 | + | C1H2g23096 | CX2g024155 | LOC_Os02g40710 | Os02g0620500 | OsAMT1;3 | Detail |
| C2H2g29061 | 2:23,111,389-23,115,393 | + | C1H2g17359 | CX2g024932 | LOC_Os02g40730 | Os02g0620600 | AMT1;2, OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1, 3", OsAMT1;3, OsAMT1.3, OsAMT1.2 | Detail |
| C2H2g23641 | 2:23,118,462-23,120,057 | - | C1H2g17305 | CX2g024918 | LOC_Os02g40750 | Os02g0769900 | - | Detail |
| C2H2g07915 | 2:23,128,520-23,133,173 | - | - | - | - | - | - | Detail |
| C2H2g25432 | 2:23,136,851-23,144,033 | + | C1H2g09682 | CX2g022252 | LOC_Os02g40770 | Os02g0621100 | SDG712 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |