| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g21876 | 1:23,172,459-23,176,288 | + | C2H1g05185 | CX1g003646 | LOC_Os01g45550 | Os01g0643300 | - | Detail |
| C1H1g25133 | 1:23,187,095-23,190,153 | - | C2H1g02636 | CX1g003628 | LOC_Os01g45570 | Os01g0643600 | SGD2, OsHOX3, SGD2/OsHOX3 | Detail |
| C1H1g17824 | 1:23,205,449-23,210,294 | - | C2H1g17274 | CX1g005269 | LOC_Os01g45620 | Os01g0643800 | - | Detail |
| C1H1g01905 | 1:23,209,454-23,209,980 | + | - | - | - | - | - | Detail |
| C1H1g14596 | 1:23,213,913-23,215,505 | + | C2H1g01755 | CX1g004663 | LOC_Os01g45640 | Os01g0644000 | - | Detail |
| C1H1g08154 | 1:23,237,663-23,238,762 | - | C2H1g00660 | CX1g003016 | LOC_Os01g45730 | Os01g0645000 | - | Detail |
| C1H1g06404 | 1:23,245,695-23,252,455 | + | C2H1g06994 | CX1g001972 | LOC_Os01g45750 | Os01g0645200 | - | Detail |
| C1H1g20018 | 1:23,273,241-23,275,506 | + | C2H1g23683 | CX1g005018 | LOC_Os01g45760 | Os01g0645400 | YUCCA1, OsYUCCA1 | Detail |
| C1H1g13313 | 1:23,296,402-23,298,910 | + | C2H1g13756 | CX1g004670 | LOC_Os01g45840 | Os01g0646000 | - | Detail |
| C1H1g03849 | 1:23,322,905-23,323,534 | + | C2H1g20334 | CX1g004039 | LOC_Os01g45900 | Os01g0647000 | - | Detail |
| C1H1g20418 | 1:23,323,788-23,324,312 | + | C2H1g20334 | CX1g004039 | LOC_Os01g45900 | Os01g0647000 | - | Detail |
| C1H1g26424 | 1:23,326,229-23,330,363 | - | C2H1g22575 | CX1g007130 | LOC_Os01g45910 | Os01g0647100 | - | Detail |
| C1H1g25052 | 1:23,346,621-23,347,299 | + | C2H1g13107 | CX1g002028 | - | - | - | Detail |
| C1H1g27497 | 1:23,370,893-23,374,582 | + | C2H1g08187 | CX1g007062 | LOC_Os01g45960 | Os01g0647700 | - | Detail |
| C1H1g28834 | 1:23,376,334-23,382,665 | - | C2H1g18846 | CX1g001110 | LOC_Os01g45990 | Os01g0648000 | OsAKT1, Os-AKT1 | Detail |
| C1H1g12681 | 1:23,400,853-23,403,569 | + | C2H1g00912 | CX1g003797 | LOC_Os01g46020 | Os01g0648500 | - | Detail |
| C1H1g06277 | 1:23,404,154-23,405,706 | + | C2H1g01299 | CX1g003920 | LOC_Os01g46030 | Os01g0648600 | MAK2 | Detail |
| C1H1g05715 | 1:23,406,335-23,410,389 | - | C2H1g27065 | CX1g001434 | LOC_Os01g46040 | Os01g0648700 | - | Detail |
| C1H1g20458 | 1:23,414,710-23,421,129 | + | C2H1g30673 | CX1g006886 | LOC_Os01g46060 | Os01g0649000 | - | Detail |
| C1H1g04276 | 1:23,422,062-23,425,981 | + | C2H1g05562 | CX1g003803 | LOC_Os01g46070 | Os01g0649100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g12265 | 3:17,761,916-17,768,943 | - | C1H3g14005 | CX3g028089 | LOC_Os03g34300 | Os03g0454100 | - | Detail |
| C2H3g25407 | 3:17,769,468-17,773,419 | + | - | - | LOC_Os03g34310 | - | - | Detail |
| C2H3g24060 | 3:17,834,168-17,844,265 | + | C1H3g30334 | CX3g029528 | - | Os03g0678400 | - | Detail |
| C2H3g17975 | 3:17,960,208-17,963,228 | + | C1H3g23806 | CX3g026576 | - | Os03g0759000 | - | Detail |
| C2H3g10346 | 3:18,090,172-18,105,947 | - | C1H3g18625 | CX3g027364 | LOC_Os03g35340 | Os03g0554900 | - | Detail |
| C2H3g04971 | 3:18,121,785-18,122,528 | - | C1H3g29658 | CX3g026045 | LOC_Os03g35370 | - | - | Detail |
| C2H3g05979 | 3:18,133,225-18,137,648 | - | C1H3g29570 | - | LOC_Os03g35454 | - | - | Detail |
| C2H3g12208 | 3:18,173,644-18,176,508 | + | C1H3g05847 | CX3g030899 | - | - | - | Detail |
| C2H3g23939 | 3:18,219,475-18,223,831 | + | C1H3g05109 | CX3g026628 | LOC_Os03g35600 | Os03g0556600 | SDRLK-20 | Detail |
| C2H3g16484 | 3:18,270,845-18,271,739 | - | C1H3g27683 | - | LOC_Os03g35620 | - | - | Detail |
| C2H3g10319 | 3:18,271,784-18,272,125 | - | - | CX3g031176 | - | - | - | Detail |
| C2H3g20317 | 3:18,272,142-18,272,912 | - | C1H3g27683 | - | LOC_Os03g35620 | - | - | Detail |
| C2H3g12177 | 3:18,361,798-18,362,366 | + | - | - | - | Os03g0558600 | - | Detail |
| C2H3g08461 | 3:18,633,763-18,634,880 | - | C1H3g18372 | CX3g026625 | LOC_Os03g36439 | Os03g0562200 | - | Detail |
| C2H3g19324 | 3:18,646,026-18,646,409 | - | C1H3g09057 | CX3g025527 | - | Os03g0562200 | - | Detail |
| C2H3g18751 | 3:18,698,011-18,702,063 | + | C1H3g31570 | CX3g030881 | LOC_Os03g36530 | Os03g0563100 | - | Detail |
| C2H3g06195 | 3:18,706,359-18,707,995 | - | C1H3g17857 | CX3g027657 | LOC_Os03g36540 | Os03g0563300 | ELL, OsCHLI | Detail |
| C2H3g17553 | 3:18,721,989-18,724,706 | + | C1H3g29929 | CX3g025994 | LOC_Os03g36560 | Os03g0563600 | - | Detail |
| C2H3g01598 | 3:18,725,336-18,725,832 | + | C1H3g19117 | CX3g025994 | LOC_Os03g36560 | Os03g0563600 | - | Detail |
| C2H3g26291 | 3:18,758,458-18,763,960 | + | C1H3g27327 | CX3g025101 | LOC_Os03g36630 | Os03g0564200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |