| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g09032 | 5:16,455,479-16,459,689 | - | C2H5g07639 | CX5g036792 | LOC_Os05g34010 | Os05g0410900 | - | Detail |
| C1H5g03344 | 5:16,467,957-16,468,945 | + | C2H5g27135 | CX5g037863 | LOC_Os05g34030 | Os05g0411100 | - | Detail |
| C1H5g23148 | 5:16,469,052-16,469,975 | + | C2H5g21110 | CX5g037863 | LOC_Os05g34030 | Os05g0411100 | - | Detail |
| C1H5g09814 | 5:16,471,488-16,481,021 | - | C2H5g05204 | CX5g040455 | LOC_Os05g34040 | Os05g0411200 | TCD5, OsTCD5, CSV1, TSV | Detail |
| C1H5g10710 | 5:16,481,611-16,485,895 | - | C2H5g30416 | CX5g037458 | LOC_Os05g34050 | Os05g0411300 | - | Detail |
| C1H5g26317 | 5:16,494,862-16,498,135 | + | C2H5g07521 | CX5g039701 | LOC_Os05g34070 | Os05g0411600 | - | Detail |
| C1H5g25427 | 5:16,514,824-16,515,825 | - | C2H5g19725 | CX5g037473 | LOC_Os05g34110 | Os05g0412000 | - | Detail |
| C1H5g01040 | 5:16,542,371-16,543,741 | - | C2H5g29274 | CX5g036799 | LOC_Os05g34150 | Os05g0412800 | - | Detail |
| C1H5g19391 | 5:16,548,891-16,550,078 | + | C2H5g25089 | CX5g039939 | LOC_Os05g34160 | Os05g0413000 | - | Detail |
| C1H5g27958 | 5:16,556,395-16,559,613 | + | C2H5g08131 | CX5g036808 | LOC_Os05g34170 | Os05g0413200 | TUB6, OsTUB6, TUBB6 | Detail |
| C1H5g07666 | 5:16,562,779-16,565,757 | + | C2H5g17519 | CX5g038505 | LOC_Os05g34180 | Os05g0413400 | - | Detail |
| C1H5g01892 | 5:16,578,551-16,582,392 | - | C2H5g09194 | CX5g038663 | LOC_Os05g34210 | Os05g0414100 | - | Detail |
| C1H5g29101 | 5:16,593,571-16,597,488 | + | C2H5g18531 | CX5g040178 | LOC_Os05g34220 | Os05g0414200 | - | Detail |
| C1H5g28207 | 5:16,599,455-16,601,521 | - | C2H5g09968 | CX5g041020 | LOC_Os05g34230 | Os05g0414300 | - | Detail |
| C1H5g30847 | 5:16,602,852-16,606,221 | - | C2H5g22407 | CX5g040102 | LOC_Os05g34240 | Os05g0414400 | - | Detail |
| C1H5g05782 | 5:16,609,220-16,611,598 | - | C2H5g11810 | CX5g039340 | LOC_Os05g34260 | Os05g0414501 | - | Detail |
| C1H5g25050 | 5:16,614,049-16,617,569 | - | C2H5g23251 | CX5g040264 | LOC_Os05g34270 | Os05g0414700 | - | Detail |
| C1H5g10718 | 5:16,627,543-16,629,163 | + | C2H5g21994 | CX5g036908 | LOC_Os05g34290 | Os05g0415200 | OsPCS1, PCS1 | Detail |
| C1H5g30603 | 5:16,636,337-16,637,727 | - | C2H5g03155 | CX5g038965 | LOC_Os05g34310 | Os05g0415400 | OsNAC24 | Detail |
| C1H5g05650 | 5:16,645,679-16,651,091 | + | C2H5g01672 | CX5g036727 | LOC_Os05g34320 | Os05g0415700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g03359 | 3:5,792,932-5,793,630 | + | C1H3g23318 | CX3g025280 | LOC_Os03g12440 | - | - | Detail |
| C2H3g24748 | 3:5,794,954-5,802,619 | + | C1H3g17135 | CX3g030046 | LOC_Os03g12450 | Os03g0225500 | - | Detail |
| C2H3g09129 | 3:5,803,343-5,810,016 | + | C1H3g25680 | CX3g028144 | LOC_Os03g12460 | Os03g0225600 | - | Detail |
| C2H3g02566 | 3:5,811,449-5,816,438 | + | C1H3g10808 | CX3g025098 | LOC_Os03g12470 | Os03g0225700 | WAK25, OsWAK25 | Detail |
| C2H3g16646 | 3:5,821,016-5,822,452 | + | C1H3g31142 | CX3g026072 | LOC_Os03g12500 | Os03g0225900 | - | Detail |
| C2H3g10692 | 3:5,829,270-5,830,121 | - | C1H3g02465 | CX3g026153 | LOC_Os03g12510 | Os03g0226200 | Hb2, OsPgb1.2 | Detail |
| C2H3g15869 | 3:5,831,583-5,833,279 | + | C1H3g31559 | CX3g028573 | LOC_Os03g12520 | Os03g0226300 | - | Detail |
| C2H3g08794 | 3:5,833,428-5,834,000 | + | C1H3g14266 | CX3g028573 | LOC_Os03g12520 | Os03g0226300 | - | Detail |
| C2H3g29082 | 3:5,839,492-5,844,120 | + | C1H3g15877 | CX3g027606 | LOC_Os03g12530 | Os03g0226400 | - | Detail |
| C2H3g13286 | 3:5,850,353-5,857,091 | + | C1H3g27940 | CX3g025975 | LOC_Os03g12550 | Os03g0226600 | - | Detail |
| C2H3g30568 | 3:5,857,943-5,859,735 | - | C1H3g15687 | CX3g027982 | LOC_Os03g12560 | Os03g0226700 | - | Detail |
| C2H3g00790 | 3:5,860,981-5,866,764 | + | C1H3g18854 | CX3g024984 | LOC_Os03g12570 | Os03g0226800 | CMT3b | Detail |
| C2H3g22427 | 3:5,867,922-5,870,733 | + | C1H3g26728 | CX3g027871 | LOC_Os03g12570 | Os03g0226901 | - | Detail |
| C2H3g07335 | 3:5,873,669-5,881,089 | + | C1H3g26232 | CX3g030829 | LOC_Os03g12590 | Os03g0227000 | - | Detail |
| C2H3g16667 | 3:5,883,692-5,891,668 | + | C1H3g22048 | CX3g026050 | LOC_Os03g12610 | Os03g0227300 | - | Detail |
| C2H3g04602 | 3:5,891,978-5,893,629 | - | C1H3g19915 | CX3g031339 | LOC_Os03g12620 | Os03g0227400 | - | Detail |
| C2H3g27028 | 3:5,903,063-5,906,526 | + | C1H3g13701 | CX3g027265 | LOC_Os03g12630 | Os03g0227500 | - | Detail |
| C2H3g25912 | 3:5,922,820-5,929,627 | + | C1H3g10637 | CX3g027504 | LOC_Os03g12660 | Os03g0227700 | OsDWF4, OsDWARF4, CYP90B2 | Detail |
| C2H3g15726 | 3:5,931,799-5,936,573 | + | C1H3g00645 | CX3g025096 | LOC_Os03g12670 | Os03g0141200 | OsBMY4 | Detail |
| C2H3g08529 | 3:5,935,003-5,936,506 | - | - | CX3g029136 | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |