| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g02644 | 5:16,248,352-16,248,764 | + | C2H5g17544 | - | LOC_Os05g33700 | Os05g0407100 | - | Detail |
| C1H5g06235 | 5:16,251,846-16,259,936 | - | C2H5g09572 | CX5g039305 | LOC_Os05g33710 | Os05g0407200 | - | Detail |
| C1H5g07655 | 5:16,273,502-16,276,522 | + | C2H5g14010 | CX5g040161 | LOC_Os05g33730 | Os05g0407500 | GID1, gid1, OsGID1, Thl, Os GID1 | Detail |
| C1H5g16377 | 5:16,292,543-16,298,303 | - | C2H5g30500 | CX5g040515 | LOC_Os05g33760 | Os05g0407900 | - | Detail |
| C1H5g29208 | 5:16,299,479-16,300,013 | - | - | - | - | - | - | Detail |
| C1H5g18086 | 5:16,310,502-16,318,701 | + | C2H5g11444 | CX5g038802 | LOC_Os05g33810 | Os05g0408200 | OsSPL9 | Detail |
| C1H5g22231 | 5:16,320,596-16,323,884 | - | C2H5g22366 | CX5g040901 | LOC_Os05g33820 | Os05g0408300 | - | Detail |
| C1H5g07753 | 5:16,338,372-16,339,250 | - | C2H5g14510 | CX5g037819 | LOC_Os05g33830 | Os05g0408800 | - | Detail |
| C1H5g01736 | 5:16,341,816-16,342,366 | - | C2H5g20401 | CX5g037932 | LOC_Os05g33910 | Os01g0162101 | - | Detail |
| C1H5g28806 | 5:16,342,750-16,348,841 | - | C2H5g21665 | CX5g039038 | LOC_Os05g33840 | Os05g0408900 | - | Detail |
| C1H5g13458 | 5:16,356,139-16,360,666 | - | C2H5g22578 | CX5g040687 | LOC_Os05g33850 | Os05g0409000 | - | Detail |
| C1H5g23907 | 5:16,367,482-16,368,533 | + | C2H5g22810 | CX5g036877 | LOC_Os05g33860 | Os05g0409100 | - | Detail |
| C1H5g25708 | 5:16,372,134-16,373,574 | + | C2H5g14027 | CX5g038152 | LOC_Os05g33870 | Os05g0409200 | - | Detail |
| C1H5g10361 | 5:16,373,908-16,378,104 | + | C2H5g06598 | CX5g038053 | LOC_Os05g33880 | Os05g0409300 | - | Detail |
| C1H5g20921 | 5:16,379,238-16,384,284 | + | C2H5g24418 | CX5g040809 | LOC_Os05g33890 | Os05g0409400 | MAP65-5 | Detail |
| C1H5g09074 | 5:16,388,271-16,390,229 | - | C2H5g11844 | CX5g041144 | LOC_Os05g33900 | Os05g0409500 | - | Detail |
| C1H5g30333 | 5:16,414,244-16,415,575 | + | C2H5g23232 | CX5g037035 | LOC_Os05g33920 | Os05g0409800 | - | Detail |
| C1H5g08005 | 5:16,425,658-16,426,710 | + | C2H5g30472 | CX5g037287 | LOC_Os05g33940 | Os05g0410200 | - | Detail |
| C1H5g00588 | 5:16,435,503-16,440,524 | - | C2H5g17136 | CX5g040712 | LOC_Os05g33960 | Os05g0410500 | - | Detail |
| C1H5g18824 | 5:16,453,084-16,455,295 | + | C2H5g01676 | CX5g037111 | LOC_Os05g33960 | Os05g0410800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g06589 | 3:19,779,082-19,779,789 | + | C1H3g26388 | CX3g027290 | LOC_Os03g38490 | Os03g0581600 | - | Detail |
| C2H3g11410 | 3:19,786,089-19,790,222 | + | C1H3g13237 | CX3g026435 | LOC_Os03g38500 | Os03g0581650 | - | Detail |
| C2H3g06922 | 3:19,793,124-19,796,821 | + | C1H3g17977 | CX3g028447 | LOC_Os03g38520 | Os03g0581800 | - | Detail |
| C2H3g10966 | 3:19,802,125-19,804,059 | + | C1H3g14219 | CX3g027412 | LOC_Os03g38540 | Os03g0582000 | - | Detail |
| C2H3g04652 | 3:19,805,126-19,807,078 | - | C1H3g04338 | CX3g028106 | LOC_Os03g38580 | Os03g0582100 | - | Detail |
| C2H3g02001 | 3:19,810,123-19,813,682 | - | C1H3g18500 | CX3g025759 | LOC_Os03g38590 | Os03g0582200 | - | Detail |
| C2H3g21731 | 3:19,814,546-19,819,217 | - | C1H3g03271 | CX3g025759 | LOC_Os03g38600 | Os03g0582300 | - | Detail |
| C2H3g25116 | 3:19,850,361-19,852,815 | + | C1H3g13726 | CX3g029359 | - | - | - | Detail |
| C2H3g10218 | 3:19,854,174-19,855,859 | - | C1H3g28190 | CX3g028203 | LOC_Os03g38710 | Os03g0583600 | OsPERK3 | Detail |
| C2H3g00374 | 3:19,862,418-19,862,882 | - | C1H3g28190 | CX3g028203 | LOC_Os03g38710 | Os03g0583600 | OsPERK3 | Detail |
| C2H3g24537 | 3:19,867,155-19,870,266 | + | C1H3g03200 | CX3g026919 | LOC_Os03g38720 | Os03g0583700 | OsUMP1 | Detail |
| C2H3g24800 | 3:19,875,886-19,878,055 | + | C1H3g23310 | CX3g030948 | LOC_Os03g38730 | Os03g0583800 | - | Detail |
| C2H3g29289 | 3:19,878,360-19,893,009 | - | C1H3g04436 | CX3g030903 | LOC_Os03g38740 | Os03g0583900 | - | Detail |
| C2H3g12332 | 3:19,901,010-19,901,665 | + | C1H3g11527 | CX3g028495 | LOC_Os03g38790 | Os03g0568500 | - | Detail |
| C2H3g13791 | 3:19,909,018-19,910,330 | + | C1H3g01309 | CX3g028700 | LOC_Os03g38790 | Os03g0568500 | - | Detail |
| C2H3g24653 | 3:19,911,161-19,912,750 | - | C1H3g23323 | CX3g030820 | LOC_Os03g38800 | Os03g0584400 | - | Detail |
| C2H3g23071 | 3:19,913,095-19,913,820 | - | - | - | - | - | - | Detail |
| C2H3g19485 | 3:19,922,006-19,923,422 | - | C1H3g11030 | CX3g025305 | - | - | - | Detail |
| C2H3g10367 | 3:19,923,603-19,924,292 | - | C1H3g22207 | CX3g025305 | - | - | - | Detail |
| C2H3g17956 | 3:19,973,161-19,979,164 | - | C1H3g12087 | CX3g028633 | LOC_Os03g38930 | Os03g0586300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |