| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g15942 | 5:14,806,407-14,808,137 | + | C2H5g14904 | CX5g038438 | LOC_Os05g31420 | Os05g0378500 | Gnd5 | Detail |
| C1H5g26766 | 5:14,841,025-14,841,713 | - | C2H5g05514 | CX5g037505 | LOC_Os05g31470 | - | - | Detail |
| C1H5g21416 | 5:14,847,264-14,852,436 | - | C2H5g07919 | CX5g040361 | LOC_Os05g31480 | Os05g0378800 | - | Detail |
| C1H5g03148 | 5:14,853,191-14,857,977 | - | C2H5g27417 | CX5g038969 | LOC_Os05g31490 | Os05g0378900 | - | Detail |
| C1H5g12936 | 5:14,863,567-14,866,978 | - | - | - | LOC_Os05g31520 | - | - | Detail |
| C1H5g20720 | 5:14,867,847-14,869,818 | - | C2H5g25052 | - | - | - | - | Detail |
| C1H5g28359 | 5:14,872,112-14,881,346 | + | C2H5g19061 | CX5g039321 | LOC_Os05g31530 | Os05g0379500 | - | Detail |
| C1H5g13126 | 5:14,882,877-14,883,458 | - | - | - | - | - | - | Detail |
| C1H5g09848 | 5:14,883,520-14,884,320 | - | - | - | - | - | - | Detail |
| C1H5g28629 | 5:14,884,371-14,884,991 | - | - | - | - | - | - | Detail |
| C1H5g31239 | 5:14,885,493-14,887,155 | - | - | - | - | Os05g0380850 | - | Detail |
| C1H5g05054 | 5:14,891,582-14,892,178 | - | C2H5g18251 | CX5g037649 | LOC_Os05g31620 | Os05g0380900 | - | Detail |
| C1H5g03678 | 5:14,909,056-14,909,574 | - | C2H5g02851 | CX5g036933 | LOC_Os05g31670 | Os05g0381400 | AWPM-19, PM19, OsPM1, OsPM19L1 | Detail |
| C1H5g22192 | 5:14,912,709-14,916,753 | + | C2H5g00812 | CX5g040874 | LOC_Os05g31680 | Os05g0381500 | - | Detail |
| C1H5g26855 | 5:14,928,977-14,932,252 | + | - | CX5g041023 | LOC_Os05g31690 | Os05g0381700 | - | Detail |
| C1H5g18693 | 5:14,960,958-14,963,095 | + | C2H5g07422 | CX5g038575 | LOC_Os05g31710 | Os05g0381900 | - | Detail |
| C1H5g25084 | 5:14,975,576-14,978,892 | + | C2H5g04833 | CX5g040022 | LOC_Os05g31720 | Os05g0382000 | - | Detail |
| C1H5g14307 | 5:14,983,196-14,987,606 | - | C2H5g08328 | CX5g037534 | LOC_Os05g31730 | Os05g0382200 | - | Detail |
| C1H5g04280 | 5:14,993,709-14,995,280 | + | C2H5g19880 | CX5g036798 | LOC_Os05g31740 | Os05g0382500 | CYP94E3, OsCYP94E3 | Detail |
| C1H5g01406 | 5:15,003,520-15,005,185 | - | C2H5g19685 | CX5g040387 | LOC_Os05g31750 | Os05g0382600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g09905 | 1:33,212,905-33,215,285 | + | C1H1g30307 | CX1g007080 | LOC_Os01g64890 | Os01g0869200 | OsMGT1, OsMRS2-2 | Detail |
| C2H1g24941 | 1:33,215,849-33,220,736 | - | C1H1g30705 | CX1g002156 | LOC_Os01g64900 | Os01g0869300 | - | Detail |
| C2H1g06937 | 1:33,222,337-33,229,940 | - | C1H1g03661 | CX1g002156 | LOC_Os01g64900 | - | - | Detail |
| C2H1g30680 | 1:33,234,744-33,237,160 | - | C1H1g25047 | CX1g002614 | LOC_Os01g64920 | Os01g0869500 | - | Detail |
| C2H1g14315 | 1:33,238,488-33,241,101 | + | C1H1g19257 | CX1g001436 | LOC_Os01g64930 | Os01g0869600 | - | Detail |
| C2H1g12747 | 1:33,242,499-33,245,068 | + | C1H1g00245 | CX1g002829 | LOC_Os01g64960 | Os01g0869800 | PSBS1, OsPsbS1, PsbS1 | Detail |
| C2H1g12820 | 1:33,255,690-33,260,814 | + | C1H1g27512 | CX1g001484 | LOC_Os01g64970 | Os01g0869900 | SAPK4, OsSAPK4 | Detail |
| C2H1g15095 | 1:33,261,090-33,266,609 | - | C1H1g13667 | CX1g002784 | LOC_Os01g64980 | Os01g0870100 | - | Detail |
| C2H1g23479 | 1:33,268,295-33,269,667 | - | - | - | - | - | - | Detail |
| C2H1g13430 | 1:33,269,594-33,274,107 | + | C1H1g03643 | CX1g005766 | LOC_Os01g64990 | Os01g0870201 | - | Detail |
| C2H1g08641 | 1:33,274,847-33,280,865 | + | C1H1g25940 | CX1g004934 | LOC_Os01g64990 | Os01g0870300 | OsAMT3;1 | Detail |
| C2H1g07832 | 1:33,283,118-33,285,486 | + | C1H1g14637 | CX1g001460 | LOC_Os01g65000 | Os01g0831300 | - | Detail |
| C2H1g11379 | 1:33,286,716-33,287,597 | - | C1H1g16493 | CX1g004252 | LOC_Os01g65010 | Os01g0870400 | SDRLK-16 | Detail |
| C2H1g20125 | 1:33,287,685-33,289,886 | - | C1H1g07139 | CX1g001391 | LOC_Os01g65010 | Os01g0870400 | SDRLK-16 | Detail |
| C2H1g08106 | 1:33,292,314-33,295,072 | - | C1H1g27684 | CX1g001391 | LOC_Os01g65060 | Os01g0870500 | - | Detail |
| C2H1g01248 | 1:33,299,994-33,301,349 | - | C1H1g27053 | CX1g005366 | - | Os01g0347200 | - | Detail |
| C2H1g01910 | 1:33,311,066-33,313,791 | + | C1H1g27684 | CX1g004252 | LOC_Os01g65060 | Os01g0642801 | - | Detail |
| C2H1g28915 | 1:33,315,190-33,322,033 | + | C1H1g29415 | CX1g002432 | LOC_Os01g65070 | Os01g0871100 | - | Detail |
| C2H1g00963 | 1:33,329,474-33,334,508 | + | C1H1g03641 | CX1g005777 | LOC_Os01g65090 | Os01g0871300 | - | Detail |
| C2H1g24816 | 1:33,335,144-33,336,972 | - | C1H1g20493 | CX1g000514 | LOC_Os01g65094 | Os01g0871350 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |