| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g23912 | 5:14,401,529-14,402,191 | - | - | CX5g036764 | LOC_Os05g30740 | Os05g0370300 | - | Detail |
| C1H5g17728 | 5:14,411,337-14,413,661 | + | C2H5g17041 | CX5g038684 | LOC_Os05g30750 | Os05g0370600 | OsFTIP7 | Detail |
| C1H5g12675 | 5:14,415,413-14,430,905 | - | C2H5g03177 | CX5g041132 | LOC_Os05g30760 | Os05g0370700 | - | Detail |
| C1H5g03586 | 5:14,437,894-14,439,007 | - | C2H5g03159 | CX5g041132 | LOC_Os05g30770 | Os05g0370700 | - | Detail |
| C1H5g09157 | 5:14,439,992-14,442,361 | - | C2H5g18725 | - | - | - | - | Detail |
| C1H5g17943 | 5:14,447,899-14,448,669 | - | C2H5g08422 | CX5g041132 | LOC_Os05g30780 | Os05g0370900 | - | Detail |
| C1H5g21956 | 5:14,462,259-14,469,208 | - | C2H5g06016 | CX5g038634 | LOC_Os05g30790 | Os05g0371100 | - | Detail |
| C1H5g25954 | 5:14,474,692-14,478,201 | + | C2H5g01418 | CX5g038746 | LOC_Os05g30800 | Os05g0371200 | - | Detail |
| C1H5g21361 | 5:14,485,449-14,485,816 | - | C2H5g22690 | CX5g038069 | LOC_Os05g30810 | Os05g0371500 | - | Detail |
| C1H5g31073 | 5:14,488,632-14,492,087 | - | C2H5g24664 | CX5g041026 | LOC_Os05g30820 | Os05g0371600 | - | Detail |
| C1H5g03916 | 5:14,508,080-14,509,832 | - | C2H5g23518 | CX5g036992 | LOC_Os05g30860 | Os05g0372000 | - | Detail |
| C1H5g18573 | 5:14,512,981-14,520,411 | + | C2H5g25829 | CX5g036869 | LOC_Os05g30870 | Os05g0372100 | - | Detail |
| C1H5g00039 | 5:14,522,490-14,523,659 | - | - | CX5g037049 | LOC_Os05g30880 | Os05g0372200 | - | Detail |
| C1H5g04173 | 5:14,524,221-14,526,645 | - | - | - | - | Os05g0372350 | - | Detail |
| C1H5g31276 | 5:14,526,386-14,526,745 | + | C2H5g24917 | CX5g039921 | LOC_Os05g30890 | Os05g0372300 | - | Detail |
| C1H5g07742 | 5:14,528,544-14,531,918 | + | C2H5g21527 | CX5g039921 | LOC_Os05g30890 | Os05g0372300 | - | Detail |
| C1H5g25459 | 5:14,532,436-14,535,746 | - | C2H5g21609 | CX5g038143 | LOC_Os05g30900 | Os05g0372400 | - | Detail |
| C1H5g08976 | 5:14,536,084-14,538,778 | + | C2H11g12527 | CX5g039049 | - | Os03g0435550 | - | Detail |
| C1H5g25038 | 5:14,543,727-14,546,425 | + | C2H5g29105 | CX5g039619 | LOC_Os05g30920 | Os05g0372800 | - | Detail |
| C1H5g13697 | 5:14,554,333-14,556,274 | - | C2H5g08208 | CX5g040118 | LOC_Os05g30940 | Os05g0372900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g01677 | 3:1,883,766-1,887,423 | - | C1H3g00456 | CX3g025825 | LOC_Os03g04620 | Os03g0139500 | - | Detail |
| C2H3g16470 | 3:1,893,023-1,894,552 | + | C1H3g23782 | CX3g025500 | LOC_Os03g04630 | Os03g0139600 | - | Detail |
| C2H3g12777 | 3:1,933,825-1,935,351 | + | C1H3g00353 | CX3g025500 | LOC_Os03g04650 | Os03g0140100 | - | Detail |
| C2H3g27330 | 3:1,940,534-1,942,090 | + | C1H3g25985 | CX3g025500 | LOC_Os03g04660 | Os03g0140200 | CYP96B5, WSL5 | Detail |
| C2H3g29153 | 3:1,951,839-1,953,458 | + | C1H3g15064 | CX3g025500 | LOC_Os03g04680 | Os03g0140400 | SD37, OsCYP96B4, CYP96B4, CYP96B4/SD37, OsDSS1, DSS1 | Detail |
| C2H3g12329 | 3:1,955,457-1,958,399 | - | C1H3g07260 | CX3g029016 | LOC_Os03g16950 | Os03g0140500 | - | Detail |
| C2H3g13203 | 3:1,964,827-1,965,304 | - | C1H3g31769 | CX3g026380 | - | Os03g0140650 | - | Detail |
| C2H3g17473 | 3:1,987,231-1,988,894 | + | C1H3g10738 | CX3g028112 | LOC_Os03g04710 | Os03g0140700 | - | Detail |
| C2H3g05466 | 3:1,992,006-1,992,782 | + | - | - | - | - | - | Detail |
| C2H3g05277 | 3:1,993,925-1,996,800 | + | C1H3g01474 | CX3g029285 | LOC_Os03g04740 | Os03g0140900 | - | Detail |
| C2H3g19470 | 3:1,997,560-1,999,274 | + | C1H3g10114 | CX3g030261 | LOC_Os03g04750 | Os03g0141000 | - | Detail |
| C2H3g09892 | 3:2,001,052-2,004,476 | + | C1H3g00645 | CX3g026884 | LOC_Os03g04770 | Os03g0141200 | OsBMY4 | Detail |
| C2H3g00749 | 3:2,005,294-2,005,643 | - | C1H3g11403 | CX3g028262 | LOC_Os03g04780 | Os03g0286500 | - | Detail |
| C2H3g24267 | 3:2,008,300-2,011,820 | + | C1H3g11848 | CX3g024968 | LOC_Os03g04830 | Os03g0141700 | - | Detail |
| C2H3g24637 | 3:2,014,747-2,017,084 | + | C1H3g03155 | CX3g027335 | LOC_Os03g04840 | Os03g0141800 | - | Detail |
| C2H3g16825 | 3:2,025,016-2,028,837 | + | C1H3g16077 | CX3g027335 | LOC_Os03g04870 | Os03g0142200 | - | Detail |
| C2H3g26010 | 3:2,035,008-2,038,711 | + | C1H3g31558 | CX3g030528 | LOC_Os03g04890 | Os03g0142500 | - | Detail |
| C2H3g05143 | 3:2,039,567-2,040,522 | - | C1H3g10254 | CX3g030147 | LOC_Os03g04900 | Os03g0142600 | Os2R_MYB33 | Detail |
| C2H3g20094 | 3:2,061,134-2,067,861 | + | C1H3g19270 | CX3g030977 | LOC_Os03g04920 | Os03g0142800 | - | Detail |
| C2H3g26910 | 3:2,068,501-2,074,019 | - | C1H3g30404 | CX3g029043 | LOC_Os03g04930 | Os03g0142900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |