| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g08501 | 5:13,091,501-13,092,025 | + | C2H5g20870 | CX5g038186 | LOC_Os05g27780 | Os05g0344200 | - | Detail |
| C1H5g01346 | 5:13,104,959-13,107,752 | - | C2H5g20264 | CX5g038759 | LOC_Os05g27749 | Os05g0343800 | - | Detail |
| C1H5g27385 | 5:13,117,535-13,118,678 | - | C2H5g04895 | CX5g038298 | LOC_Os05g28150 | Os05g0574000 | - | Detail |
| C1H5g10495 | 5:13,124,228-13,124,955 | - | C2H5g24296 | - | LOC_Os05g28170 | Os05g0349000 | - | Detail |
| C1H5g28470 | 5:13,125,004-13,125,391 | - | C2H5g01277 | - | - | - | - | Detail |
| C1H5g17654 | 5:13,129,514-13,140,472 | - | C2H5g21735 | CX5g038977 | LOC_Os05g28180 | Os05g0349200 | - | Detail |
| C1H5g06860 | 5:13,154,074-13,154,778 | + | C2H5g17650 | CX5g037238 | - | Os05g0349400 | - | Detail |
| C1H5g27836 | 5:13,155,919-13,157,340 | - | C2H5g21599 | CX5g037323 | LOC_Os05g28190 | Os05g0349500 | - | Detail |
| C1H5g13828 | 5:13,162,845-13,168,627 | + | C2H5g06848 | CX5g039025 | LOC_Os05g28200 | Os05g0349700 | - | Detail |
| C1H5g05895 | 5:13,169,734-13,170,127 | - | C2H5g23580 | CX5g036783 | LOC_Os05g28210 | Os05g0349800 | - | Detail |
| C1H5g13261 | 5:13,172,837-13,173,611 | - | C2H5g02639 | - | - | - | - | Detail |
| C1H5g14457 | 5:13,192,670-13,196,676 | + | C2H5g29583 | CX5g039857 | LOC_Os05g28280 | Os05g0350500 | - | Detail |
| C1H5g17562 | 5:13,200,849-13,203,424 | + | C2H5g21599 | CX5g039007 | LOC_Os05g28290 | Os05g0350600 | - | Detail |
| C1H5g16123 | 5:13,206,195-13,217,685 | + | C2H5g07484 | CX5g037642 | LOC_Os05g28300 | Os05g0350700 | - | Detail |
| C1H5g17008 | 5:13,222,024-13,222,950 | - | C2H5g28285 | CX5g040736 | LOC_Os05g28320 | Os05g0350900 | Os2R_MYB54 | Detail |
| C1H5g12930 | 5:13,237,625-13,238,428 | - | C2H5g09274 | CX5g038612 | LOC_Os05g28350 | Os05g0351200 | - | Detail |
| C1H5g29097 | 5:13,259,584-13,262,512 | - | C2H5g17200 | CX5g038755 | LOC_Os05g28370 | Os05g0351500 | - | Detail |
| C1H5g24445 | 5:13,285,991-13,290,668 | + | C2H5g14159 | CX5g039488 | LOC_Os05g28460 | Os05g0352700 | - | Detail |
| C1H5g20523 | 5:13,295,782-13,297,507 | + | C2H5g18746 | CX5g039121 | - | - | - | Detail |
| C1H5g18199 | 5:13,302,108-13,306,187 | + | C2H5g08977 | CX5g038297 | LOC_Os05g28470 | Os05g0352750 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g28905 | 5:9,107,917-9,109,364 | - | C1H5g26341 | CX5g040110 | LOC_Os05g19570 | Os05g0276500 | OsEXPA3 | Detail |
| C2H5g07930 | 5:9,137,558-9,138,574 | - | C1H5g09212 | CX5g038660 | LOC_Os05g19600 | Os05g0277000 | - | Detail |
| C2H5g03374 | 5:9,157,292-9,159,827 | - | C1H5g06044 | CX5g040958 | LOC_Os05g19630 | Os05g0277300 | - | Detail |
| C2H5g20956 | 5:9,186,603-9,187,349 | + | C1H5g02530 | CX5g038137 | LOC_Os05g19670 | Os05g0277500 | - | Detail |
| C2H5g25018 | 5:9,249,128-9,255,855 | - | C1H5g11498 | CX5g037933 | LOC_Os05g19910 | Os05g0278500 | OsFMT, OsFMT1, OsAT5, OsAT5/OsFMT | Detail |
| C2H5g00557 | 5:9,270,807-9,271,806 | - | - | CX5g039844 | - | - | - | Detail |
| C2H5g28009 | 5:9,282,859-9,290,634 | - | C1H5g29704 | CX5g039281 | LOC_Os05g19954 | Os05g0279300 | - | Detail |
| C2H5g12080 | 5:9,309,446-9,315,430 | + | C1H5g23736 | CX5g037702 | LOC_Os05g19970 | Os05g0279400 | - | Detail |
| C2H5g08718 | 5:9,320,458-9,330,009 | + | C1H5g23078 | CX5g039549 | LOC_Os05g19974 | Os05g0279600 | - | Detail |
| C2H5g23273 | 5:9,337,131-9,340,143 | + | C1H5g13096 | CX5g039172 | LOC_Os05g20020 | Os05g0279900 | - | Detail |
| C2H5g01527 | 5:9,411,485-9,413,024 | + | C1H5g25005 | CX5g040064 | LOC_Os05g20050 | Os05g0280200 | - | Detail |
| C2H5g23868 | 5:9,415,022-9,418,946 | - | C1H5g28156 | CX5g039890 | - | Os05g0480700 | - | Detail |
| C2H5g28478 | 5:9,448,522-9,451,356 | - | C1H5g26284 | CX5g038222 | LOC_Os05g20100 | Os05g0280500 | - | Detail |
| C2H5g04863 | 5:9,476,010-9,478,803 | - | - | CX5g039194 | - | - | - | Detail |
| C2H5g21904 | 5:9,484,936-9,486,894 | + | - | - | - | - | - | Detail |
| C2H5g02247 | 5:9,509,517-9,509,885 | - | C1H5g03157 | CX5g038694 | LOC_Os05g20420 | - | - | Detail |
| C2H5g18533 | 5:9,522,507-9,524,670 | - | C1H5g05125 | - | - | - | - | Detail |
| C2H5g23953 | 5:9,530,132-9,530,514 | - | C1H5g08577 | - | - | Os02g0216200 | - | Detail |
| C2H5g14404 | 5:10,011,667-10,016,243 | - | C1H5g05724 | CX5g036941 | LOC_Os05g21180 | Os05g0287800 | OsIPCS3 | Detail |
| C2H5g08960 | 5:10,306,871-10,307,263 | + | C1H5g04296 | CX5g039313 | - | Os05g0289100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |