| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g15039 | 5:12,828,957-12,830,828 | + | C2H5g28661 | CX5g040774 | LOC_Os05g27730 | Os05g0343400 | WRKY53, OsWRKY53 | Detail |
| C1H5g04216 | 5:12,834,512-12,835,555 | - | C2H5g16881 | CX5g038974 | LOC_Os05g27740 | - | - | Detail |
| C1H5g25967 | 5:12,844,306-12,845,569 | + | C2H5g15026 | - | - | - | - | Detail |
| C1H5g00690 | 5:12,865,309-12,870,596 | + | C2H5g02617 | CX5g039180 | LOC_Os05g28090 | Os05g0348100 | OsNdhl | Detail |
| C1H5g23669 | 5:12,871,966-12,872,455 | - | C2H5g26312 | CX5g039491 | - | Os05g0588300 | - | Detail |
| C1H5g19699 | 5:12,903,347-12,904,201 | + | C2H5g18593 | CX5g039840 | LOC_Os05g28040 | Os05g0347400 | OsG1L9 | Detail |
| C1H5g17201 | 5:12,920,650-12,923,329 | + | C2H5g24655 | CX5g038657 | LOC_Os05g28010 | Os05g0347000 | - | Detail |
| C1H5g26235 | 5:12,938,982-12,939,672 | + | C2H5g25283 | CX5g041112 | LOC_Os05g27980 | Os05g0346800 | - | Detail |
| C1H5g30238 | 5:12,943,741-12,950,452 | + | C2H5g25338 | CX5g037334 | LOC_Os05g27960 | Os05g0346500 | Endo-Os | Detail |
| C1H5g26042 | 5:12,953,336-12,957,651 | - | C2H5g21564 | CX5g037807 | LOC_Os05g27950 | Os05g0346400 | - | Detail |
| C1H5g02425 | 5:12,958,100-12,961,072 | + | C2H5g17547 | CX5g037658 | LOC_Os05g27940 | Os05g0346300 | - | Detail |
| C1H5g00367 | 5:12,963,731-12,967,018 | + | C2H5g29783 | CX5g041046 | LOC_Os05g27930 | Os05g0346200 | OsDREB2B | Detail |
| C1H5g21070 | 5:12,968,768-12,975,729 | - | C2H5g22054 | CX5g039687 | LOC_Os05g27920 | Os05g0346100 | - | Detail |
| C1H5g30213 | 5:12,989,404-12,989,985 | + | C2H5g22004 | CX5g039960 | LOC_Os05g27890 | Os05g0345700 | - | Detail |
| C1H5g28263 | 5:12,991,248-12,992,229 | + | C2H5g21940 | CX5g039960 | LOC_Os05g27890 | Os05g0345700 | - | Detail |
| C1H5g11256 | 5:12,995,064-13,002,071 | + | C2H5g05395 | CX5g038275 | LOC_Os05g27880 | Os05g0345500 | - | Detail |
| C1H5g03976 | 5:13,004,740-13,016,822 | + | C2H5g03667 | CX5g039058 | LOC_Os05g27870 | Os05g0345400 | - | Detail |
| C1H5g26971 | 5:13,050,293-13,054,393 | - | C2H5g28639 | CX5g038888 | LOC_Os05g27820 | Os05g0345100 | OsSec14-14 | Detail |
| C1H5g06134 | 5:13,081,043-13,081,333 | + | C2H5g26086 | CX5g040808 | LOC_Os05g27790 | Os05g0344400 | - | Detail |
| C1H5g05160 | 5:13,081,412-13,083,530 | + | C2H5g01225 | CX5g040808 | LOC_Os05g27790 | Os05g0344400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g02193 | 3:26,699,326-26,706,899 | + | C1H3g19794 | CX3g028424 | LOC_Os03g50980 | Os03g0719100 | SIZ2, OsSIZ2 | Detail |
| C2H3g22670 | 3:26,708,932-26,716,540 | - | C1H3g27091 | CX3g025374 | LOC_Os03g51000 | Os03g0719300 | - | Detail |
| C2H3g02088 | 3:26,720,194-26,723,023 | - | C1H3g07073 | CX3g028369 | LOC_Os03g51010 | Os03g0719400 | - | Detail |
| C2H3g19826 | 3:26,728,386-26,735,558 | - | C1H3g18727 | CX3g030509 | LOC_Os03g51020 | Os03g0719500 | - | Detail |
| C2H3g21521 | 3:26,738,385-26,746,105 | - | C1H3g17828 | CX3g025792 | LOC_Os03g51030 | Os03g0719800 | PHYA, phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA | Detail |
| C2H3g23219 | 3:26,750,154-26,752,376 | - | C1H3g02668 | CX3g027542 | LOC_Os03g51040 | Os03g0719850 | - | Detail |
| C2H3g09005 | 3:26,753,854-26,757,585 | - | C1H3g04945 | CX3g029279 | LOC_Os03g51050 | Os03g0719900 | - | Detail |
| C2H3g27436 | 3:26,776,619-26,798,197 | + | C1H3g17570 | CX3g026462 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| C2H3g28128 | 3:26,800,176-26,801,438 | + | C1H3g14449 | CX3g027259 | LOC_Os03g51090 | Os03g0720400 | - | Detail |
| C2H3g18749 | 3:26,802,500-26,803,954 | + | C1H3g00523 | CX11g011204 | LOC_Os11g37260 | - | - | Detail |
| C2H3g30385 | 3:26,815,065-26,819,266 | + | C1H3g14449 | CX3g027259 | LOC_Os03g51090 | Os03g0720400 | - | Detail |
| C2H3g13711 | 3:26,826,622-26,828,116 | + | C1H3g17570 | CX3g026462 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| C2H3g08962 | 3:26,845,435-26,846,852 | + | C1H3g27041 | CX3g028983 | LOC_Os03g51110 | Os03g0720800 | Os2R_MYB41 | Detail |
| C2H3g28611 | 3:26,857,234-26,880,062 | + | C1H3g28337 | CX3g027802 | LOC_Os03g51140 | Os03g0721200 | - | Detail |
| C2H3g23618 | 3:26,880,115-26,882,433 | - | C1H3g18786 | CX3g029589 | LOC_Os03g51150 | Os03g0721300 | - | Detail |
| C2H3g12002 | 3:26,883,244-26,886,210 | - | C1H3g12607 | CX3g029088 | LOC_Os03g51160 | Os03g0721400 | - | Detail |
| C2H3g26307 | 3:26,890,520-26,893,306 | - | C1H3g28641 | CX3g025020 | LOC_Os03g51180 | - | - | Detail |
| C2H3g16842 | 3:26,903,282-26,903,796 | + | C1H3g29102 | CX3g026654 | LOC_Os03g51200 | Os03g0279200 | - | Detail |
| C2H3g24429 | 3:26,907,935-26,913,652 | + | C1H3g04974 | CX3g029940 | LOC_Os03g51220 | Os03g0722100 | - | Detail |
| C2H3g01976 | 3:26,917,235-26,923,450 | + | C1H3g07846 | CX3g030800 | LOC_Os03g51230 | Os03g0722400 | OsDDM1b | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |