| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g26850 | 5:12,479,801-12,484,786 | - | C2H5g12100 | CX5g040823 | LOC_Os05g26890 | Os05g0333200 | D1, RGA1 | Detail |
| C1H5g09873 | 5:12,505,097-12,509,299 | - | C2H5g13294 | CX5g039023 | LOC_Os05g26926 | Os05g0334400 | OsDjA8, OsDjA7/8 | Detail |
| C1H5g26652 | 5:12,517,998-12,519,299 | - | C2H5g05539 | CX5g039430 | LOC_Os05g26940 | Os05g0334750 | - | Detail |
| C1H5g14628 | 5:12,524,654-12,531,633 | - | C2H5g00998 | CX5g039567 | LOC_Os05g26954 | Os05g0335100 | - | Detail |
| C1H5g28741 | 5:12,543,862-12,544,554 | + | C2H5g01656 | CX5g039300 | LOC_Os05g27000 | Os05g0335500 | - | Detail |
| C1H5g13136 | 5:12,551,896-12,560,777 | - | C2H5g11593 | CX5g039294 | LOC_Os05g27010 | Os05g0335800 | - | Detail |
| C1H5g08274 | 5:12,571,128-12,572,595 | - | C2H5g29679 | CX5g040542 | LOC_Os05g27090 | Os05g0337200 | - | Detail |
| C1H5g13307 | 5:12,587,298-12,590,018 | - | C2H5g27066 | CX5g038207 | LOC_Os05g27100 | Os05g0337400 | - | Detail |
| C1H5g16890 | 5:12,643,183-12,652,710 | + | C2H5g06947 | CX5g040973 | LOC_Os05g27304 | Os05g0338900 | - | Detail |
| C1H5g20164 | 5:12,653,188-12,659,388 | - | C2H5g16002 | CX5g040584 | LOC_Os05g27320 | Os05g0339000 | - | Detail |
| C1H5g07750 | 5:12,673,437-12,674,871 | + | C2H5g15328 | CX5g039225 | LOC_Os05g27340 | Os05g0339200 | - | Detail |
| C1H5g13370 | 5:12,686,781-12,687,551 | - | C2H1g23312 | CX12g016277 | - | - | - | Detail |
| C1H5g30721 | 5:12,714,916-12,716,721 | - | - | CX5g037597 | LOC_Os06g40420 | Os01g0150950 | - | Detail |
| C1H5g05577 | 5:12,719,799-12,722,730 | + | C2H5g14220 | CX5g036883 | LOC_Os05g27500 | Os05g0341100 | - | Detail |
| C1H5g03022 | 5:12,737,464-12,742,375 | - | C2H5g02870 | CX5g040935 | LOC_Os05g26890 | Os05g0333200 | D1, RGA1 | Detail |
| C1H5g06416 | 5:12,744,527-12,747,850 | - | C2H5g23486 | CX5g038002 | LOC_Os05g27530 | Os05g0341600 | - | Detail |
| C1H5g16606 | 5:12,766,052-12,768,659 | - | C2H5g01175 | CX5g037918 | LOC_Os05g27580 | Os05g0342000 | - | Detail |
| C1H5g03243 | 5:12,769,223-12,771,791 | - | C2H5g01175 | CX5g037918 | LOC_Os05g27580 | - | - | Detail |
| C1H5g21954 | 5:12,779,704-12,780,246 | - | C2H5g01175 | CX5g036953 | LOC_Os05g27590 | Os05g0342100 | - | Detail |
| C1H5g14668 | 5:12,797,273-12,800,923 | + | C2H5g27836 | CX5g037297 | LOC_Os05g27660 | Os05g0342900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g08088 | 1:23,044,591-23,047,367 | + | C1H1g31055 | CX1g002458 | LOC_Os01g45350 | Os01g0640600 | - | Detail |
| C2H1g22980 | 1:23,046,848-23,048,906 | - | C1H1g10058 | CX1g004617 | LOC_Os01g45360 | Os01g0640700 | - | Detail |
| C2H1g13504 | 1:23,051,648-23,054,849 | - | C1H1g19962 | CX1g003997 | LOC_Os01g45370 | Os01g0640800 | - | Detail |
| C2H1g09207 | 1:23,055,650-23,059,742 | + | C1H1g17185 | CX1g000116 | LOC_Os01g45380 | Os01g0641000 | - | Detail |
| C2H1g17482 | 1:23,061,086-23,064,129 | + | C1H1g25061 | CX1g004780 | LOC_Os01g45390 | Os01g0641100 | - | Detail |
| C2H1g02385 | 1:23,078,541-23,081,482 | - | C1H1g31552 | CX1g004195 | LOC_Os01g45439 | Os01g0641700 | - | Detail |
| C2H1g03402 | 1:23,086,625-23,088,923 | + | C1H1g00902 | CX1g003051 | LOC_Os01g45450 | Os01g0641800 | - | Detail |
| C2H1g07647 | 1:23,090,833-23,091,147 | + | C1H1g12918 | CX1g005344 | LOC_Os01g45460 | Os01g0642000 | - | Detail |
| C2H1g14331 | 1:23,091,174-23,098,582 | + | C1H1g12918 | CX1g005344 | LOC_Os01g45460 | Os01g0642100 | - | Detail |
| C2H1g23910 | 1:23,098,762-23,099,498 | - | C1H1g06064 | - | LOC_Os01g45470 | Os01g0642200 | - | Detail |
| C2H1g05902 | 1:23,132,843-23,134,398 | + | C1H1g02209 | CX1g000192 | LOC_Os01g45520 | Os01g0642801 | - | Detail |
| C2H1g10748 | 1:23,134,990-23,137,497 | - | C1H1g26078 | CX1g001242 | LOC_Os01g45530 | Os01g0642900 | - | Detail |
| C2H1g09079 | 1:23,137,588-23,138,064 | - | C1H1g26078 | CX1g001242 | LOC_Os01g45530 | Os01g0642900 | - | Detail |
| C2H1g05185 | 1:23,155,106-23,159,500 | + | C1H1g21876 | CX1g003646 | LOC_Os01g45550 | Os01g0643300 | - | Detail |
| C2H1g02636 | 1:23,170,308-23,173,345 | - | C1H1g25133 | CX1g003628 | LOC_Os01g45570 | Os01g0643600 | SGD2, OsHOX3, SGD2/OsHOX3 | Detail |
| C2H1g17274 | 1:23,188,624-23,193,473 | - | C1H1g17824 | CX1g005269 | LOC_Os01g45620 | Os01g0643800 | - | Detail |
| C2H1g01755 | 1:23,197,092-23,198,684 | + | C1H1g14596 | CX1g004663 | LOC_Os01g45640 | Os01g0644000 | - | Detail |
| C2H1g00660 | 1:23,216,768-23,217,823 | - | C1H1g08154 | CX1g003016 | LOC_Os01g45730 | Os01g0645000 | - | Detail |
| C2H1g06994 | 1:23,226,508-23,233,386 | + | C1H1g06404 | CX1g001972 | LOC_Os01g45750 | Os01g0645200 | - | Detail |
| C2H1g23683 | 1:23,246,717-23,248,981 | + | C1H1g20018 | CX1g005018 | LOC_Os01g45760 | Os01g0645400 | YUCCA1, OsYUCCA1 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |