| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g00809 | 5:11,982,210-11,984,061 | - | C2H5g18962 | CX5g037533 | LOC_Os05g25560 | Os05g0319900 | - | Detail |
| C1H5g07771 | 5:12,001,890-12,004,026 | + | C2H5g16379 | CX5g040926 | LOC_Os05g25600 | Os05g0320300 | - | Detail |
| C1H5g18434 | 5:12,005,370-12,006,031 | + | C2H5g17208 | CX5g040614 | LOC_Os05g25620 | Os05g0320500 | - | Detail |
| C1H5g11691 | 5:12,012,645-12,014,131 | - | C2H5g12884 | CX5g040663 | LOC_Os05g25640 | Os05g0320700 | OsC4HL | Detail |
| C1H5g29408 | 5:12,015,766-12,016,554 | - | C2H5g12884 | CX5g040663 | LOC_Os05g25640 | Os05g0320700 | OsC4HL | Detail |
| C1H5g31853 | 5:12,053,670-12,054,445 | + | C2H5g23272 | CX5g039065 | - | Os05g0321900 | - | Detail |
| C1H5g21190 | 5:12,055,039-12,058,391 | + | C2H5g30247 | CX5g039065 | LOC_Os05g25770 | Os05g0321900 | - | Detail |
| C1H5g09562 | 5:12,072,384-12,073,544 | + | C2H5g20457 | CX5g039731 | LOC_Os05g25770 | Os05g0322900 | - | Detail |
| C1H5g20684 | 5:12,079,618-12,082,497 | + | C2H5g00966 | CX5g037483 | LOC_Os05g25780 | Os05g0323100 | - | Detail |
| C1H5g15138 | 5:12,088,755-12,088,970 | - | C2H5g12832 | CX5g037550 | LOC_Os05g25784 | Os05g0323400 | - | Detail |
| C1H5g03510 | 5:12,094,616-12,098,484 | + | C2H5g27944 | - | - | - | - | Detail |
| C1H5g02171 | 5:12,094,751-12,098,348 | - | C2H5g23193 | CX5g037938 | - | Os05g0475600 | - | Detail |
| C1H5g07569 | 5:12,110,411-12,114,059 | + | C2H5g25840 | CX5g038231 | LOC_Os05g25840 | Os05g0323800 | - | Detail |
| C1H5g09336 | 5:12,115,350-12,119,558 | + | C2H5g02562 | CX5g039355 | LOC_Os05g25850 | Os05g0323900 | SODA1, SodA1, Mn-SOD, Mn- SOD, OsMSD, OsMSD1 | Detail |
| C1H5g18365 | 5:12,121,188-12,122,633 | + | C2H5g29319 | CX5g038450 | LOC_Os05g25860 | Os05g0324000 | - | Detail |
| C1H5g16408 | 5:12,140,296-12,142,180 | + | C2H5g21674 | CX5g037596 | LOC_Os05g25170 | - | - | Detail |
| C1H5g24963 | 5:12,142,187-12,144,548 | + | C2H5g11879 | CX12g015435 | LOC_Os05g25170 | - | - | Detail |
| C1H5g19700 | 5:12,146,724-12,149,612 | + | C2H5g22294 | CX5g038330 | LOC_Os05g25860 | Os05g0324000 | - | Detail |
| C1H5g26142 | 5:12,149,959-12,153,426 | - | C2H5g05113 | CX5g040251 | LOC_Os05g25880 | Os05g0324200 | - | Detail |
| C1H5g26115 | 5:12,158,868-12,160,517 | + | C2H5g07422 | CX5g041147 | LOC_Os05g25890 | Os05g0324300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g25257 | 1:2,948,840-2,952,688 | - | C1H1g26302 | CX1g005999 | LOC_Os01g07260 | Os01g0166800 | - | Detail |
| C2H1g06988 | 1:2,952,843-2,953,442 | + | C1H1g20393 | CX1g001312 | - | Os01g0167100 | - | Detail |
| C2H1g10239 | 1:2,969,391-2,970,507 | + | - | - | - | - | - | Detail |
| C2H1g17311 | 1:2,971,564-2,972,370 | + | C1H1g04419 | CX1g006992 | LOC_Os01g06740 | Os01g0167400 | - | Detail |
| C2H1g15989 | 1:2,972,985-2,976,261 | - | C1H1g22310 | CX1g004676 | LOC_Os01g07310 | Os01g0167500 | - | Detail |
| C2H1g11597 | 1:2,981,363-2,982,152 | + | C1H1g19378 | CX1g004086 | LOC_Os01g07320 | Os01g0167600 | - | Detail |
| C2H1g08925 | 1:2,983,446-2,993,691 | - | C1H1g21201 | CX1g005536 | LOC_Os01g07340 | Os01g0167750 | - | Detail |
| C2H1g08657 | 1:2,994,831-2,997,777 | - | C1H1g22514 | CX1g001588 | LOC_Os01g07350 | Os01g0167800 | - | Detail |
| C2H1g00388 | 1:2,999,428-3,002,707 | - | C1H1g16535 | CX1g004828 | LOC_Os01g07360 | Os01g0167900 | - | Detail |
| C2H1g24620 | 1:3,005,777-3,010,579 | - | C1H1g01854 | CX1g001191 | LOC_Os01g07370 | Os01g0168100 | - | Detail |
| C2H1g00503 | 1:3,015,893-3,017,204 | - | C1H1g14782 | CX1g003480 | LOC_Os01g07376 | Os01g0168200 | - | Detail |
| C2H1g03327 | 1:3,019,426-3,022,470 | - | C1H1g01998 | CX1g005935 | LOC_Os01g07382 | Os01g0168300 | - | Detail |
| C2H1g07482 | 1:3,026,854-3,029,838 | + | C1H1g20548 | CX1g007194 | LOC_Os01g07390 | Os01g0168400 | - | Detail |
| C2H1g01297 | 1:3,031,384-3,035,775 | + | C1H1g12621 | CX1g006740 | LOC_Os01g07400 | Os01g0168500 | - | Detail |
| C2H1g01134 | 1:3,037,345-3,040,478 | + | C1H1g18695 | CX1g006052 | LOC_Os01g07410 | Os01g0168600 | - | Detail |
| C2H1g21723 | 1:3,042,244-3,044,701 | - | C1H1g22702 | CX1g002240 | LOC_Os01g07420 | Os01g0168800 | - | Detail |
| C2H1g04358 | 1:3,080,108-3,080,866 | - | C1H1g28058 | CX1g004682 | LOC_Os01g07480 | Os01g0169400 | - | Detail |
| C2H1g17287 | 1:3,088,614-3,103,335 | - | C1H1g15062 | CX1g003594 | LOC_Os01g07490 | Os01g0169500 | - | Detail |
| C2H1g13966 | 1:3,104,450-3,109,671 | - | C1H1g17469 | CX1g003939 | LOC_Os01g07500 | Os01g0169800 | FIB, fib | Detail |
| C2H1g25779 | 1:3,116,370-3,122,991 | - | C1H1g12059 | CX1g001588 | LOC_Os01g16050 | Os01g0531200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |