| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g00809 | 5:11,982,210-11,984,061 | - | C2H5g18962 | CX5g037533 | LOC_Os05g25560 | Os05g0319900 | - | Detail |
| C1H5g07771 | 5:12,001,890-12,004,026 | + | C2H5g16379 | CX5g040926 | LOC_Os05g25600 | Os05g0320300 | - | Detail |
| C1H5g18434 | 5:12,005,370-12,006,031 | + | C2H5g17208 | CX5g040614 | LOC_Os05g25620 | Os05g0320500 | - | Detail |
| C1H5g11691 | 5:12,012,645-12,014,131 | - | C2H5g12884 | CX5g040663 | LOC_Os05g25640 | Os05g0320700 | OsC4HL | Detail |
| C1H5g29408 | 5:12,015,766-12,016,554 | - | C2H5g12884 | CX5g040663 | LOC_Os05g25640 | Os05g0320700 | OsC4HL | Detail |
| C1H5g31853 | 5:12,053,670-12,054,445 | + | C2H5g23272 | CX5g039065 | - | Os05g0321900 | - | Detail |
| C1H5g21190 | 5:12,055,039-12,058,391 | + | C2H5g30247 | CX5g039065 | LOC_Os05g25770 | Os05g0321900 | - | Detail |
| C1H5g09562 | 5:12,072,384-12,073,544 | + | C2H5g20457 | CX5g039731 | LOC_Os05g25770 | Os05g0322900 | - | Detail |
| C1H5g20684 | 5:12,079,618-12,082,497 | + | C2H5g00966 | CX5g037483 | LOC_Os05g25780 | Os05g0323100 | - | Detail |
| C1H5g15138 | 5:12,088,755-12,088,970 | - | C2H5g12832 | CX5g037550 | LOC_Os05g25784 | Os05g0323400 | - | Detail |
| C1H5g03510 | 5:12,094,616-12,098,484 | + | C2H5g27944 | - | - | - | - | Detail |
| C1H5g02171 | 5:12,094,751-12,098,348 | - | C2H5g23193 | CX5g037938 | - | Os05g0475600 | - | Detail |
| C1H5g07569 | 5:12,110,411-12,114,059 | + | C2H5g25840 | CX5g038231 | LOC_Os05g25840 | Os05g0323800 | - | Detail |
| C1H5g09336 | 5:12,115,350-12,119,558 | + | C2H5g02562 | CX5g039355 | LOC_Os05g25850 | Os05g0323900 | SODA1, SodA1, Mn-SOD, Mn- SOD, OsMSD, OsMSD1 | Detail |
| C1H5g18365 | 5:12,121,188-12,122,633 | + | C2H5g29319 | CX5g038450 | LOC_Os05g25860 | Os05g0324000 | - | Detail |
| C1H5g16408 | 5:12,140,296-12,142,180 | + | C2H5g21674 | CX5g037596 | LOC_Os05g25170 | - | - | Detail |
| C1H5g24963 | 5:12,142,187-12,144,548 | + | C2H5g11879 | CX12g015435 | LOC_Os05g25170 | - | - | Detail |
| C1H5g19700 | 5:12,146,724-12,149,612 | + | C2H5g22294 | CX5g038330 | LOC_Os05g25860 | Os05g0324000 | - | Detail |
| C1H5g26142 | 5:12,149,959-12,153,426 | - | C2H5g05113 | CX5g040251 | LOC_Os05g25880 | Os05g0324200 | - | Detail |
| C1H5g26115 | 5:12,158,868-12,160,517 | + | C2H5g07422 | CX5g041147 | LOC_Os05g25890 | Os05g0324300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g07629 | 5:22,064,353-22,067,318 | + | C1H5g10593 | CX5g039260 | LOC_Os05g45410 | Os05g0530400 | OsSPL7, SPL7, HSFA-4d | Detail |
| C2H5g03685 | 5:22,067,847-22,072,276 | - | C1H5g11637 | CX5g040944 | LOC_Os05g45420 | Os05g0530500 | - | Detail |
| C2H5g04972 | 5:22,073,757-22,074,254 | + | - | CX5g038767 | - | - | - | Detail |
| C2H5g21081 | 5:22,078,620-22,080,044 | - | C1H5g15948 | CX5g039408 | LOC_Os05g45430 | Os05g0530701 | - | Detail |
| C2H5g25354 | 5:22,092,044-22,092,487 | + | C1H5g13864 | CX5g038460 | LOC_Os05g45450 | Os05g0531100 | OsS40-1 | Detail |
| C2H5g07402 | 5:22,095,183-22,096,118 | + | C1H5g03559 | CX5g038119 | LOC_Os05g45460 | Os05g0531200 | - | Detail |
| C2H5g17651 | 5:22,102,533-22,103,427 | + | C1H5g22321 | CX5g037192 | LOC_Os05g45480 | Os05g0531400 | - | Detail |
| C2H5g11219 | 5:22,106,953-22,110,969 | + | C1H5g15758 | CX5g038581 | LOC_Os05g45490 | Os05g0531500 | - | Detail |
| C2H5g15734 | 5:22,111,662-22,112,486 | - | C1H5g28033 | CX5g037981 | LOC_Os05g45500 | Os05g0531600 | - | Detail |
| C2H5g12427 | 5:22,113,402-22,114,241 | + | C1H5g08016 | CX5g038393 | - | Os05g0531700 | - | Detail |
| C2H5g24044 | 5:22,120,833-22,122,254 | - | C1H5g04935 | CX5g038750 | LOC_Os05g45570 | Os05g0531800 | - | Detail |
| C2H5g13615 | 5:22,127,448-22,134,174 | + | C1H5g27355 | - | - | - | - | Detail |
| C2H5g02345 | 5:22,136,356-22,138,948 | - | C1H5g04935 | CX5g039224 | LOC_Os05g45570 | Os05g0532300 | - | Detail |
| C2H5g12338 | 5:22,142,104-22,144,335 | - | C1H5g05498 | CX5g040316 | LOC_Os05g45580 | Os05g0532500 | - | Detail |
| C2H5g06712 | 5:22,145,904-22,149,704 | - | C1H5g05803 | CX5g038442 | LOC_Os05g45590 | Os05g0532600 | OsHXK2 | Detail |
| C2H5g30367 | 5:22,150,996-22,151,253 | - | C1H5g22210 | CX5g039722 | LOC_Os05g45610 | Os05g0532800 | - | Detail |
| C2H5g14529 | 5:22,152,080-22,152,452 | + | C1H5g25723 | CX5g037022 | LOC_Os09g33986 | Os09g0515200 | - | Detail |
| C2H5g24963 | 5:22,153,495-22,156,675 | + | C1H5g21932 | CX5g038984 | LOC_Os05g45660 | Os05g0533100 | - | Detail |
| C2H5g26779 | 5:22,157,002-22,161,321 | - | C1H5g22241 | CX5g040305 | LOC_Os05g45670 | Os05g0533200 | - | Detail |
| C2H5g19069 | 5:22,166,219-22,167,019 | - | C1H5g26762 | CX5g037078 | LOC_Os05g45700 | Os05g0533450 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |