| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g29871 | 5:8,459,655-8,460,486 | - | C2H5g06365 | CX5g038788 | - | - | - | Detail |
| C1H5g22297 | 5:8,460,128-8,461,011 | + | C2H5g07418 | CX5g040066 | LOC_Os05g18780 | - | - | Detail |
| C1H5g23740 | 5:8,462,941-8,464,518 | + | C2H5g07418 | CX5g038825 | LOC_Os05g18780 | Os05g0270500 | - | Detail |
| C1H5g05288 | 5:8,509,880-8,513,967 | + | C2H8g04421 | CX10g009598 | - | - | - | Detail |
| C1H5g07422 | 5:8,520,847-8,524,083 | + | C2H5g13254 | CX5g040763 | LOC_Os05g18770 | Os05g0270200 | OsSUN1 | Detail |
| C1H5g12896 | 5:8,526,925-8,530,245 | - | C2H5g22742 | CX5g038173 | LOC_Os05g18750 | Os05g0270000 | - | Detail |
| C1H5g04723 | 5:8,541,545-8,543,558 | - | C2H5g20813 | CX5g040818 | LOC_Os05g19150 | Os05g0273800 | - | Detail |
| C1H5g19633 | 5:8,561,249-8,562,663 | - | C2H4g29979 | CX4g032396 | - | - | - | Detail |
| C1H5g24613 | 5:8,566,947-8,575,810 | + | C2H5g23596 | CX5g037963 | LOC_Os05g19270 | Os05g0274200 | MSH2, OsMSH2 | Detail |
| C1H5g22471 | 5:8,578,996-8,584,614 | + | C2H5g05262 | CX5g038105 | LOC_Os05g19280 | Os05g0274300 | - | Detail |
| C1H5g09467 | 5:8,615,152-8,616,720 | + | C2H5g00274 | CX5g040495 | LOC_Os05g19370 | Os05g0274900 | - | Detail |
| C1H5g29936 | 5:8,617,414-8,618,676 | - | - | - | - | Os05g0274950 | - | Detail |
| C1H5g23375 | 5:8,618,802-8,621,186 | - | C2H5g21767 | CX5g040741 | LOC_Os05g19380 | Os05g0275000 | - | Detail |
| C1H5g00832 | 5:8,626,045-8,628,861 | - | C2H5g00793 | CX5g040347 | LOC_Os05g19390 | Os05g0275100 | OsPPR939 | Detail |
| C1H5g06892 | 5:8,632,541-8,637,656 | + | C2H5g02127 | CX5g039057 | LOC_Os05g19470 | - | - | Detail |
| C1H5g22556 | 5:8,638,486-8,644,753 | - | C2H5g11590 | - | LOC_Os05g19480 | Os05g0275700 | - | Detail |
| C1H5g03721 | 5:8,663,246-8,665,737 | + | C2H5g02832 | CX5g039415 | LOC_Os05g19500 | Os05g0276100 | OsCHX14 | Detail |
| C1H5g26241 | 5:8,669,247-8,670,507 | - | - | - | - | - | - | Detail |
| C1H5g26341 | 5:8,689,678-8,691,125 | - | C2H5g28905 | CX5g040110 | LOC_Os05g19570 | Os05g0276500 | OsEXPA3 | Detail |
| C1H5g09212 | 5:8,714,705-8,715,715 | - | C2H5g07930 | CX5g038660 | LOC_Os05g19600 | Os05g0277000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g11107 | 5:11,284,076-11,287,843 | - | C1H5g18969 | CX5g039364 | LOC_Os05g23610 | Os05g0301600 | OsINH2 | Detail |
| C2H5g30488 | 5:11,299,780-11,304,802 | - | C1H5g13833 | CX5g038383 | LOC_Os05g23600 | Os05g0301500 | - | Detail |
| C2H5g15419 | 5:11,337,068-11,344,288 | - | C1H5g25741 | CX5g039737 | LOC_Os05g23530 | Os05g0300700 | - | Detail |
| C2H5g00677 | 5:11,356,557-11,357,506 | + | C1H5g08150 | CX5g038824 | - | Os05g0482400 | EUI1, eui1, GA16, 17ox, CYP714D1, EUI, CYP714D1/EUI, LG5 | Detail |
| C2H5g24108 | 5:11,359,892-11,360,796 | + | - | - | - | - | - | Detail |
| C2H5g01000 | 5:11,364,368-11,365,002 | - | - | CX5g039051 | - | - | - | Detail |
| C2H5g13191 | 5:11,386,359-11,388,794 | + | C1H5g23960 | CX5g037400 | LOC_Os05g23470 | Os05g0299700 | - | Detail |
| C2H5g12441 | 5:11,389,339-11,390,546 | - | C1H5g10338 | CX5g039100 | LOC_Os05g23440 | Os05g0299500 | - | Detail |
| C2H5g25475 | 5:11,401,218-11,401,442 | - | - | - | - | - | - | Detail |
| C2H5g29124 | 5:11,401,644-11,403,214 | + | C1H5g16907 | CX5g041087 | LOC_Os05g23450 | Os05g0125600 | - | Detail |
| C2H5g22808 | 5:11,405,918-11,413,365 | - | C1H5g10724 | CX5g039100 | LOC_Os05g23440 | Os05g0299500 | - | Detail |
| C2H5g10787 | 5:11,423,646-11,429,535 | + | C1H5g22140 | CX5g037270 | LOC_Os05g23430 | Os05g0299300 | - | Detail |
| C2H5g08398 | 5:11,431,276-11,436,314 | + | C1H5g26259 | CX5g037770 | LOC_Os05g23420 | Os05g0299200 | - | Detail |
| C2H5g16507 | 5:11,447,206-11,449,537 | + | C1H5g16206 | CX5g039540 | LOC_Os05g23840 | Os05g0304100 | - | Detail |
| C2H5g25548 | 5:11,453,620-11,458,632 | + | C1H5g08335 | CX5g038810 | LOC_Os05g23860 | Os05g0304400 | OsGDI2 | Detail |
| C2H5g22505 | 5:11,465,467-11,471,525 | + | C1H5g06395 | CX5g039261 | LOC_Os05g23880 | Os05g0304600 | - | Detail |
| C2H5g01064 | 5:11,496,109-11,503,222 | - | C1H5g01632 | CX5g037017 | LOC_Os05g23924 | Os05g0304900 | - | Detail |
| C2H5g30014 | 5:11,515,970-11,525,571 | + | C1H5g22159 | CX5g038283 | LOC_Os05g23940 | Os05g0305100 | - | Detail |
| C2H5g05339 | 5:11,601,443-11,605,240 | + | C1H5g28207 | CX5g037690 | LOC_Os05g23990 | Os05g0305600 | - | Detail |
| C2H5g07432 | 5:11,605,893-11,612,123 | - | C1H5g16715 | CX5g037290 | LOC_Os05g24000 | Os05g0305700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |