| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g13669 | 5:7,463,795-7,468,267 | - | C2H5g10863 | CX5g039794 | LOC_Os05g16230 | Os05g0251200 | - | Detail |
| C1H5g11478 | 5:7,471,901-7,473,157 | - | C2H5g12394 | CX5g039447 | LOC_Os05g16240 | Os05g0251200 | - | Detail |
| C1H5g13415 | 5:7,474,950-7,479,303 | + | C2H5g03213 | CX5g038303 | LOC_Os05g16250 | Os05g0251400 | OsBVF1, P31<sup>comet</sup> | Detail |
| C1H5g25482 | 5:7,481,388-7,484,201 | + | C2H5g18069 | CX5g038303 | - | Os05g0251500 | - | Detail |
| C1H5g22880 | 5:7,487,995-7,491,891 | + | C2H5g11253 | CX5g037603 | - | - | - | Detail |
| C1H5g03577 | 5:7,489,093-7,494,918 | - | C2H5g17103 | CX5g040268 | LOC_Os05g16280 | Os05g0251900 | - | Detail |
| C1H5g13508 | 5:7,497,940-7,502,969 | - | C2H5g24772 | CX5g041044 | LOC_Os05g16290 | Os05g0252000 | - | Detail |
| C1H5g26814 | 5:7,514,364-7,516,023 | - | C2H5g01822 | CX5g037929 | LOC_Os05g16300 | Os05g0252100 | - | Detail |
| C1H5g13165 | 5:7,560,818-7,561,289 | + | C2H5g15484 | CX5g039636 | LOC_Os05g16420 | Os05g0253200 | - | Detail |
| C1H5g26412 | 5:7,633,753-7,637,377 | + | C2H5g01726 | CX5g040627 | LOC_Os05g16630 | Os05g0255600 | - | Detail |
| C1H5g13724 | 5:7,640,895-7,645,875 | + | C2H5g24880 | CX5g040616 | LOC_Os05g16640 | Os05g0255800 | - | Detail |
| C1H5g15674 | 5:7,650,875-7,656,493 | + | C2H5g00655 | CX5g039252 | LOC_Os05g16660 | Os05g0256000 | - | Detail |
| C1H5g11784 | 5:7,669,303-7,680,295 | + | C2H5g00991 | CX5g038401 | LOC_Os05g16430 | Os05g0256100 | - | Detail |
| C1H5g15820 | 5:7,730,571-7,741,013 | + | C2H5g02628 | CX5g040531 | LOC_Os05g16430 | Os05g0256500 | - | Detail |
| C1H5g24182 | 5:7,766,659-7,776,349 | + | C2H5g15704 | CX5g039056 | LOC_Os05g16430 | Os05g0257100 | - | Detail |
| C1H5g28432 | 5:7,780,957-7,781,515 | + | C2H5g05784 | CX3g030223 | - | - | - | Detail |
| C1H5g26063 | 5:7,817,075-7,823,465 | + | C2H5g12556 | CX5g036934 | LOC_Os05g16420 | Os05g0253200 | - | Detail |
| C1H5g03004 | 5:7,845,727-7,846,645 | + | C2H5g12556 | CX5g038401 | - | Os05g0261700 | - | Detail |
| C1H5g04336 | 5:7,847,001-7,848,449 | + | C2H5g07983 | CX5g036934 | LOC_Os05g16670 | Os05g0263100 | - | Detail |
| C1H5g16401 | 5:7,855,230-7,860,196 | + | C2H5g15568 | CX5g038074 | LOC_Os05g16740 | Os05g0263100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g27863 | 3:23,729,695-23,730,839 | - | C1H3g24128 | - | LOC_Os03g45528 | Os03g0658000 | - | Detail |
| C2H3g11605 | 3:23,754,010-23,762,839 | - | C1H3g08032 | CX3g028381 | LOC_Os03g45619 | Os03g0658800 | - | Detail |
| C2H3g00843 | 3:23,790,799-23,791,254 | + | C1H3g00885 | CX3g029438 | LOC_Os03g45710 | Os03g0659200 | - | Detail |
| C2H3g07162 | 3:23,792,058-23,794,629 | - | C1H3g09830 | CX3g029511 | LOC_Os03g45720 | Os03g0659300 | - | Detail |
| C2H3g28770 | 3:23,795,429-23,800,874 | - | C1H3g25241 | CX3g026126 | LOC_Os03g45730 | Os03g0659400 | - | Detail |
| C2H3g01171 | 3:23,815,459-23,817,731 | + | C1H3g19695 | CX3g026935 | LOC_Os03g45750 | Os03g0659700 | - | Detail |
| C2H3g24902 | 3:23,818,228-23,821,088 | - | C1H3g28197 | CX3g026095 | LOC_Os03g45760 | Os03g0659800 | - | Detail |
| C2H3g00978 | 3:23,822,127-23,829,347 | - | C1H3g28109 | CX3g025786 | LOC_Os03g45770 | Os03g0659900 | - | Detail |
| C2H3g13984 | 3:23,836,673-23,837,032 | - | C1H3g20654 | CX3g025578 | LOC_Os03g45800 | Os03g0660400 | - | Detail |
| C2H3g15265 | 3:23,842,920-23,847,738 | - | C1H7g12901 | CX3g028827 | LOC_Os03g61860 | - | - | Detail |
| C2H3g28162 | 3:23,852,051-23,852,371 | + | C1H3g08111 | CX3g028895 | LOC_Os03g45830 | Os03g0660300 | - | Detail |
| C2H3g17830 | 3:23,859,993-23,860,301 | + | C1H3g26323 | CX3g028895 | LOC_Os03g45850 | Os03g0660400 | - | Detail |
| C2H3g00293 | 3:23,866,503-23,866,805 | + | C1H3g15531 | CX3g025578 | LOC_Os03g45860 | Os03g0660500 | - | Detail |
| C2H3g01118 | 3:23,884,414-23,885,723 | - | C1H3g22914 | CX3g026002 | LOC_Os03g45870 | Os03g0660700 | - | Detail |
| C2H3g16487 | 3:23,916,079-23,920,135 | + | C1H3g16718 | CX3g030219 | LOC_Os03g45920 | Os03g0661300 | TUB8, OsTUB8, TUBB8 | Detail |
| C2H3g01668 | 3:23,944,783-23,945,557 | - | C1H3g24127 | - | - | - | - | Detail |
| C2H3g29758 | 3:23,947,990-23,953,762 | + | C1H3g08409 | CX3g028179 | LOC_Os03g46040 | Os03g0663100 | - | Detail |
| C2H3g29429 | 3:23,955,175-23,955,855 | - | C1H3g13489 | CX3g030670 | LOC_Os03g46060 | Os03g0663400 | - | Detail |
| C2H3g20889 | 3:23,956,746-23,957,435 | - | C1H3g28997 | CX3g026067 | LOC_Os03g46070 | Os03g0663500 | - | Detail |
| C2H3g27587 | 3:23,979,186-23,984,211 | + | C1H3g12643 | CX3g030773 | LOC_Os03g46090 | Os03g0663700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |