| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g13669 | 5:7,463,795-7,468,267 | - | C2H5g10863 | CX5g039794 | LOC_Os05g16230 | Os05g0251200 | - | Detail |
| C1H5g11478 | 5:7,471,901-7,473,157 | - | C2H5g12394 | CX5g039447 | LOC_Os05g16240 | Os05g0251200 | - | Detail |
| C1H5g13415 | 5:7,474,950-7,479,303 | + | C2H5g03213 | CX5g038303 | LOC_Os05g16250 | Os05g0251400 | OsBVF1, P31<sup>comet</sup> | Detail |
| C1H5g25482 | 5:7,481,388-7,484,201 | + | C2H5g18069 | CX5g038303 | - | Os05g0251500 | - | Detail |
| C1H5g22880 | 5:7,487,995-7,491,891 | + | C2H5g11253 | CX5g037603 | - | - | - | Detail |
| C1H5g03577 | 5:7,489,093-7,494,918 | - | C2H5g17103 | CX5g040268 | LOC_Os05g16280 | Os05g0251900 | - | Detail |
| C1H5g13508 | 5:7,497,940-7,502,969 | - | C2H5g24772 | CX5g041044 | LOC_Os05g16290 | Os05g0252000 | - | Detail |
| C1H5g26814 | 5:7,514,364-7,516,023 | - | C2H5g01822 | CX5g037929 | LOC_Os05g16300 | Os05g0252100 | - | Detail |
| C1H5g13165 | 5:7,560,818-7,561,289 | + | C2H5g15484 | CX5g039636 | LOC_Os05g16420 | Os05g0253200 | - | Detail |
| C1H5g26412 | 5:7,633,753-7,637,377 | + | C2H5g01726 | CX5g040627 | LOC_Os05g16630 | Os05g0255600 | - | Detail |
| C1H5g13724 | 5:7,640,895-7,645,875 | + | C2H5g24880 | CX5g040616 | LOC_Os05g16640 | Os05g0255800 | - | Detail |
| C1H5g15674 | 5:7,650,875-7,656,493 | + | C2H5g00655 | CX5g039252 | LOC_Os05g16660 | Os05g0256000 | - | Detail |
| C1H5g11784 | 5:7,669,303-7,680,295 | + | C2H5g00991 | CX5g038401 | LOC_Os05g16430 | Os05g0256100 | - | Detail |
| C1H5g15820 | 5:7,730,571-7,741,013 | + | C2H5g02628 | CX5g040531 | LOC_Os05g16430 | Os05g0256500 | - | Detail |
| C1H5g24182 | 5:7,766,659-7,776,349 | + | C2H5g15704 | CX5g039056 | LOC_Os05g16430 | Os05g0257100 | - | Detail |
| C1H5g28432 | 5:7,780,957-7,781,515 | + | C2H5g05784 | CX3g030223 | - | - | - | Detail |
| C1H5g26063 | 5:7,817,075-7,823,465 | + | C2H5g12556 | CX5g036934 | LOC_Os05g16420 | Os05g0253200 | - | Detail |
| C1H5g03004 | 5:7,845,727-7,846,645 | + | C2H5g12556 | CX5g038401 | - | Os05g0261700 | - | Detail |
| C1H5g04336 | 5:7,847,001-7,848,449 | + | C2H5g07983 | CX5g036934 | LOC_Os05g16670 | Os05g0263100 | - | Detail |
| C1H5g16401 | 5:7,855,230-7,860,196 | + | C2H5g15568 | CX5g038074 | LOC_Os05g16740 | Os05g0263100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g15270 | 3:22,437,636-22,439,218 | + | C1H3g22885 | CX3g030894 | LOC_Os03g43570 | - | - | Detail |
| C2H3g21892 | 3:22,443,813-22,445,355 | + | C1H3g28970 | CX3g030114 | LOC_Os03g43580 | Os03g0636700 | - | Detail |
| C2H3g10602 | 3:22,448,505-22,452,412 | - | C1H3g09456 | CX3g028317 | LOC_Os03g43590 | Os03g0636800 | - | Detail |
| C2H3g26963 | 3:22,495,684-22,499,379 | + | C1H3g17802 | CX3g027391 | LOC_Os03g43670 | Os03g0637800 | OsCR4, MIS2 | Detail |
| C2H3g21555 | 3:22,504,569-22,513,592 | - | C1H3g08726 | CX3g029790 | LOC_Os03g43684 | Os03g0637900 | - | Detail |
| C2H3g25520 | 3:22,531,667-22,536,177 | + | C1H3g11114 | CX3g028463 | LOC_Os03g43720 | Os03g0638200 | - | Detail |
| C2H3g16047 | 3:22,537,773-22,543,641 | - | C1H3g15945 | CX3g029266 | LOC_Os03g43730 | Os03g0638300 | - | Detail |
| C2H3g25175 | 3:22,555,490-22,560,425 | + | C1H3g27096 | CX3g026087 | LOC_Os03g43760 | Os03g0638800 | - | Detail |
| C2H3g20789 | 3:22,596,819-22,613,130 | + | C1H3g11228 | CX3g027536 | LOC_Os03g43800 | - | - | Detail |
| C2H3g02886 | 3:22,623,862-22,626,488 | + | C1H3g23874 | CX3g030991 | LOC_Os03g43810 | Os03g0639300 | OsBP5 | Detail |
| C2H3g22381 | 3:22,710,307-22,714,181 | - | C1H3g03720 | CX3g029268 | LOC_Os03g43840 | Os03g0639600 | - | Detail |
| C2H3g06362 | 3:22,718,756-22,723,436 | + | C1H3g07222 | CX3g025724 | LOC_Os03g43850 | Os03g0639700 | - | Detail |
| C2H3g24990 | 3:22,723,737-22,726,929 | - | C1H3g11773 | CX3g027146 | LOC_Os03g43860 | Os03g0639800 | OsVPS2 | Detail |
| C2H3g01125 | 3:22,747,298-22,752,780 | - | C1H3g13764 | CX3g026102 | LOC_Os03g43890 | Os03g0640100 | OsMSI1 | Detail |
| C2H3g20256 | 3:22,753,154-22,755,125 | - | C1H3g13764 | CX3g026102 | LOC_Os03g43890 | Os03g0640100 | OsMSI1 | Detail |
| C2H3g20329 | 3:22,756,194-22,756,648 | - | C1H3g15764 | - | LOC_Os03g43910 | Os03g0640400 | LO9-177 | Detail |
| C2H3g06880 | 3:22,760,005-22,761,732 | - | C1H3g09832 | CX3g025959 | LOC_Os03g43900 | Os03g0640300 | - | Detail |
| C2H3g28747 | 3:22,765,462-22,768,272 | - | C1H3g02135 | - | LOC_Os03g43910 | Os03g0640400 | LO9-177 | Detail |
| C2H3g10248 | 3:22,776,871-22,782,681 | - | C1H3g29126 | CX3g025023 | LOC_Os03g43930 | Os03g0640800 | - | Detail |
| C2H3g24666 | 3:22,817,245-22,822,201 | - | C1H3g01593 | CX3g029177 | LOC_Os03g43970 | Os03g0641200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |