| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g13669 | 5:7,463,795-7,468,267 | - | C2H5g10863 | CX5g039794 | LOC_Os05g16230 | Os05g0251200 | - | Detail |
| C1H5g11478 | 5:7,471,901-7,473,157 | - | C2H5g12394 | CX5g039447 | LOC_Os05g16240 | Os05g0251200 | - | Detail |
| C1H5g13415 | 5:7,474,950-7,479,303 | + | C2H5g03213 | CX5g038303 | LOC_Os05g16250 | Os05g0251400 | OsBVF1, P31<sup>comet</sup> | Detail |
| C1H5g25482 | 5:7,481,388-7,484,201 | + | C2H5g18069 | CX5g038303 | - | Os05g0251500 | - | Detail |
| C1H5g22880 | 5:7,487,995-7,491,891 | + | C2H5g11253 | CX5g037603 | - | - | - | Detail |
| C1H5g03577 | 5:7,489,093-7,494,918 | - | C2H5g17103 | CX5g040268 | LOC_Os05g16280 | Os05g0251900 | - | Detail |
| C1H5g13508 | 5:7,497,940-7,502,969 | - | C2H5g24772 | CX5g041044 | LOC_Os05g16290 | Os05g0252000 | - | Detail |
| C1H5g26814 | 5:7,514,364-7,516,023 | - | C2H5g01822 | CX5g037929 | LOC_Os05g16300 | Os05g0252100 | - | Detail |
| C1H5g13165 | 5:7,560,818-7,561,289 | + | C2H5g15484 | CX5g039636 | LOC_Os05g16420 | Os05g0253200 | - | Detail |
| C1H5g26412 | 5:7,633,753-7,637,377 | + | C2H5g01726 | CX5g040627 | LOC_Os05g16630 | Os05g0255600 | - | Detail |
| C1H5g13724 | 5:7,640,895-7,645,875 | + | C2H5g24880 | CX5g040616 | LOC_Os05g16640 | Os05g0255800 | - | Detail |
| C1H5g15674 | 5:7,650,875-7,656,493 | + | C2H5g00655 | CX5g039252 | LOC_Os05g16660 | Os05g0256000 | - | Detail |
| C1H5g11784 | 5:7,669,303-7,680,295 | + | C2H5g00991 | CX5g038401 | LOC_Os05g16430 | Os05g0256100 | - | Detail |
| C1H5g15820 | 5:7,730,571-7,741,013 | + | C2H5g02628 | CX5g040531 | LOC_Os05g16430 | Os05g0256500 | - | Detail |
| C1H5g24182 | 5:7,766,659-7,776,349 | + | C2H5g15704 | CX5g039056 | LOC_Os05g16430 | Os05g0257100 | - | Detail |
| C1H5g28432 | 5:7,780,957-7,781,515 | + | C2H5g05784 | CX3g030223 | - | - | - | Detail |
| C1H5g26063 | 5:7,817,075-7,823,465 | + | C2H5g12556 | CX5g036934 | LOC_Os05g16420 | Os05g0253200 | - | Detail |
| C1H5g03004 | 5:7,845,727-7,846,645 | + | C2H5g12556 | CX5g038401 | - | Os05g0261700 | - | Detail |
| C1H5g04336 | 5:7,847,001-7,848,449 | + | C2H5g07983 | CX5g036934 | LOC_Os05g16670 | Os05g0263100 | - | Detail |
| C1H5g16401 | 5:7,855,230-7,860,196 | + | C2H5g15568 | CX5g038074 | LOC_Os05g16740 | Os05g0263100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g23443 | 2:9,312,014-9,314,037 | + | C1H2g21563 | CX2g020444 | LOC_Os02g17850 | Os02g0279600 | - | Detail |
| C2H2g02230 | 2:9,321,240-9,324,362 | + | C1H2g29701 | CX2g020861 | LOC_Os02g17860 | Os07g0239500 | - | Detail |
| C2H2g22254 | 2:9,342,759-9,345,076 | - | C1H2g30462 | CX2g019433 | LOC_Os02g17870 | Os02g0280100 | - | Detail |
| C2H2g21745 | 2:9,359,520-9,360,837 | + | C1H2g23928 | CX2g019485 | LOC_Os02g17880 | Os02g0280200 | - | Detail |
| C2H2g22076 | 2:9,363,772-9,365,499 | + | C1H2g15475 | CX2g023880 | LOC_Os02g17900 | Os02g0280200 | - | Detail |
| C2H2g23290 | 2:9,370,980-9,378,155 | + | C1H2g20630 | CX2g024365 | LOC_Os02g17910 | Os02g0280400 | - | Detail |
| C2H2g01679 | 2:9,378,617-9,380,691 | - | C1H2g27774 | CX2g024322 | LOC_Os02g17920 | Os02g0280500 | - | Detail |
| C2H2g01411 | 2:9,386,647-9,388,311 | + | C1H2g22538 | CX2g022684 | LOC_Os02g17940 | Os02g0280700 | HIS1 | Detail |
| C2H2g01817 | 2:9,387,483-9,388,299 | - | C1H2g26596 | - | - | Os02g0280850 | - | Detail |
| C2H2g22053 | 2:9,408,530-9,419,491 | + | C1H2g23738 | CX2g021215 | LOC_Os02g17970 | Os02g0281000 | - | Detail |
| C2H2g18134 | 2:9,424,282-9,427,413 | + | C1H2g23081 | CX2g021458 | LOC_Os02g17990 | Os02g0281150 | - | Detail |
| C2H2g23947 | 2:9,431,991-9,442,971 | + | C1H2g00148 | CX2g023725 | LOC_Os02g18000 | Os02g0282500 | - | Detail |
| C2H2g14242 | 2:9,449,011-9,450,292 | - | C1H2g10163 | - | LOC_Os07g11490 | Os07g0215200 | - | Detail |
| C2H2g04968 | 2:9,450,329-9,450,995 | - | C1H2g30284 | - | - | - | - | Detail |
| C2H2g17385 | 2:9,467,899-9,471,183 | + | C1H2g23106 | CX2g020367 | LOC_Os02g18080 | Os02g0282000 | XinN1 | Detail |
| C2H2g12795 | 2:9,471,184-9,473,450 | + | C1H2g31079 | - | - | - | - | Detail |
| C2H2g19917 | 2:9,479,742-9,480,212 | - | C1H2g21154 | CX2g024283 | LOC_Os02g18090 | Os02g0282100 | - | Detail |
| C2H2g09421 | 2:9,545,682-9,551,894 | - | C1H2g05212 | CX2g023635 | LOC_Os02g18180 | Os02g0282900 | - | Detail |
| C2H2g24903 | 2:9,581,626-9,587,814 | + | C1H2g28374 | CX2g022574 | LOC_Os02g18320 | Os02g0283800 | TMS10, OsSERK4 | Detail |
| C2H2g09307 | 2:9,611,666-9,612,056 | + | - | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |