| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g27661 | 1:22,331,812-22,334,197 | + | C2H1g23009 | - | - | - | - | Detail |
| C1H1g19725 | 1:22,336,811-22,343,802 | - | C2H1g25582 | CX1g004618 | LOC_Os01g43380 | Os01g0622000 | OsCUGT1 | Detail |
| C1H1g06555 | 1:22,344,850-22,345,048 | - | - | - | - | - | - | Detail |
| C1H1g08672 | 1:22,348,337-22,352,384 | - | C2H1g15176 | CX1g000056 | LOC_Os01g43390 | Os01g0622300 | - | Detail |
| C1H1g11826 | 1:22,353,320-22,361,825 | - | - | - | LOC_Os01g46110 | Os01g0622400 | - | Detail |
| C1H1g22865 | 1:22,361,750-22,365,847 | + | C2H1g30156 | CX1g001074 | LOC_Os01g43410 | Os01g0622600 | OsCDPK1 | Detail |
| C1H1g18789 | 1:22,366,090-22,369,031 | - | C2H1g02104 | CX1g000635 | LOC_Os01g43420 | Os01g0622700 | - | Detail |
| C1H1g20868 | 1:22,386,134-22,394,665 | - | C2H1g10689 | CX1g004629 | LOC_Os01g43460 | Os01g0623200 | - | Detail |
| C1H1g24955 | 1:22,416,127-22,422,142 | + | C2H1g01444 | CX1g000368 | LOC_Os01g43480 | Os01g0623500 | - | Detail |
| C1H1g04827 | 1:22,422,226-22,423,663 | - | C2H1g06403 | CX1g004281 | LOC_Os01g43490 | Os01g0623600 | - | Detail |
| C1H1g11055 | 1:22,432,238-22,433,186 | + | C2H1g23699 | CX5g040723 | LOC_Os01g43510 | Os01g0623900 | - | Detail |
| C1H1g31514 | 1:22,436,982-22,447,556 | - | C2H1g29376 | CX1g006896 | LOC_Os01g43520 | Os01g0624000 | - | Detail |
| C1H1g27681 | 1:22,455,901-22,456,571 | + | C2H1g14460 | CX5g038552 | LOC_Os01g43530 | Os01g0225600 | OsLea14-A | Detail |
| C1H1g00190 | 1:22,461,094-22,466,153 | + | C2H1g28317 | CX1g006589 | LOC_Os01g43540 | Os01g0624500 | OsSGT1 | Detail |
| C1H1g11259 | 1:22,469,755-22,470,501 | - | C2H1g27058 | CX1g001039 | LOC_Os01g43550 | Os01g0624700 | OsWRKY03, OsWRKY12 | Detail |
| C1H1g00319 | 1:22,481,443-22,486,025 | + | C2H1g20706 | CX1g003323 | LOC_Os01g43580 | Os01g0625200 | - | Detail |
| C1H1g14466 | 1:22,490,707-22,491,808 | + | C2H1g04036 | CX1g003980 | LOC_Os01g43590 | Os01g0625300 | - | Detail |
| C1H1g19854 | 1:22,497,681-22,498,023 | + | - | - | - | - | - | Detail |
| C1H1g26404 | 1:22,502,537-22,503,352 | + | C2H1g20132 | - | - | - | - | Detail |
| C1H1g17074 | 1:22,511,214-22,518,317 | - | C2H1g15171 | - | LOC_Os01g43620 | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g11742 | 2:5,273,597-5,275,375 | + | C1H2g24396 | CX2g021980 | LOC_Os02g10800 | Os02g0202400 | BT1-1, OsBT1-1, OsEnS-29 | Detail |
| C2H2g19152 | 2:5,276,189-5,277,880 | - | C1H2g08933 | CX2g024114 | LOC_Os02g10810 | Os02g0202500 | - | Detail |
| C2H2g03245 | 2:5,280,679-5,283,557 | - | C1H2g01124 | CX2g021583 | LOC_Os02g10820 | Os02g0202600 | - | Detail |
| C2H2g06319 | 2:5,284,423-5,289,562 | - | C1H2g31302 | CX2g022814 | LOC_Os02g10830 | Os02g0202700 | OsSAT1;2 | Detail |
| C2H2g07043 | 2:5,291,017-5,294,153 | - | C1H2g29373 | CX2g019052 | LOC_Os02g10850 | Os02g0202900 | - | Detail |
| C2H2g24991 | 2:5,296,406-5,298,717 | - | C1H2g02349 | CX2g019052 | LOC_Os02g10860 | Os02g0203000 | OsHY5L1, OsbZIP18 | Detail |
| C2H2g13298 | 2:5,322,255-5,323,208 | - | - | - | - | Os02g0578201 | - | Detail |
| C2H2g10759 | 2:5,330,786-5,335,148 | - | C1H2g24176 | CX2g020524 | LOC_Os02g10900 | Os02g0203500 | RLS1 | Detail |
| C2H2g18458 | 2:5,338,312-5,339,617 | - | C1H2g09288 | CX2g021071 | LOC_Os02g10920 | Os02g0203700 | SRZ1 | Detail |
| C2H2g20592 | 2:5,353,511-5,361,697 | + | C1H2g01355 | CX2g021033 | LOC_Os02g10970 | Os02g0121300 | LRT2, CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2 | Detail |
| C2H2g16217 | 2:5,363,787-5,366,941 | + | C1H2g02729 | CX2g020882 | LOC_Os02g10990 | Os02g0204400 | - | Detail |
| C2H2g15057 | 2:5,370,856-5,372,360 | + | C1H2g29802 | CX2g024407 | LOC_Os02g11000 | Os02g0204500 | - | Detail |
| C2H2g26988 | 2:5,391,116-5,393,386 | - | C1H2g04626 | CX2g022229 | LOC_Os02g11020 | Os02g0204700 | - | Detail |
| C2H2g03770 | 2:5,423,064-5,425,361 | - | C1H2g15482 | CX2g019164 | LOC_Os02g11030 | Os02g0205000 | - | Detail |
| C2H2g05927 | 2:5,426,667-5,427,963 | - | C1H2g23876 | CX2g022500 | LOC_Os02g11040 | Os02g0205200 | - | Detail |
| C2H2g06065 | 2:5,433,561-5,438,148 | - | C1H2g25099 | CX2g023949 | LOC_Os02g11050 | Os02g0205300 | - | Detail |
| C2H2g04587 | 2:5,440,616-5,445,478 | + | C1H2g05033 | CX2g022352 | LOC_Os02g11060 | Os02g0205400 | - | Detail |
| C2H2g22003 | 2:5,446,223-5,447,903 | - | C1H2g08007 | CX2g023216 | LOC_Os02g11070 | Os02g0205500 | - | Detail |
| C2H2g16132 | 2:5,478,867-5,480,336 | - | C1H2g21297 | CX2g022369 | LOC_Os02g11110 | Os02g0206100 | - | Detail |
| C2H2g24159 | 2:5,485,258-5,486,748 | - | C1H2g21297 | CX2g022369 | LOC_Os02g11130 | Os02g0206400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |