| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g15273 | 5:3,831,454-3,832,605 | - | C2H5g24682 | CX5g040319 | LOC_Os05g08540 | Os05g0178100 | GA3OX1, OsGA3ox1, GA3ox1, OsGA3OX1 | Detail |
| C1H5g24081 | 5:3,834,404-3,835,475 | - | C2H5g23593 | CX5g038579 | LOC_Os05g08550 | - | - | Detail |
| C1H5g18416 | 5:3,836,538-3,838,831 | - | C2H5g22086 | - | - | Os05g0178300 | - | Detail |
| C1H5g28500 | 5:3,840,108-3,843,426 | - | C2H5g19576 | CX5g037936 | LOC_Os05g08560 | Os05g0178400 | - | Detail |
| C1H5g30909 | 5:3,849,015-3,851,278 | - | C2H5g23931 | CX5g039091 | LOC_Os05g08570 | Os05g0178600 | - | Detail |
| C1H5g11220 | 5:3,851,313-3,851,564 | - | C2H5g20930 | CX5g038646 | - | Os05g0178600 | - | Detail |
| C1H5g28275 | 5:3,874,896-3,878,806 | + | C2H5g20358 | CX5g038400 | LOC_Os05g08600 | Os05g0178900 | - | Detail |
| C1H5g03795 | 5:3,881,317-3,885,675 | + | C2H5g18108 | CX5g039771 | LOC_Os05g08610 | Os05g0179000 | - | Detail |
| C1H5g15516 | 5:3,896,992-3,897,444 | + | C2H5g28488 | - | LOC_Os08g23900 | - | - | Detail |
| C1H5g19959 | 5:3,919,187-3,921,168 | - | C2H5g17102 | CX5g037983 | LOC_Os05g08640 | Os05g0179300 | - | Detail |
| C1H5g21520 | 5:3,945,129-3,948,203 | + | C2H5g23753 | CX5g039721 | LOC_Os05g08730 | Os05g0179800 | - | Detail |
| C1H5g27830 | 5:3,989,851-3,993,349 | - | C2H5g25802 | CX5g038350 | LOC_Os05g08790 | Os05g0180400 | - | Detail |
| C1H5g02747 | 5:3,994,282-3,997,197 | - | C2H5g06685 | CX5g037875 | LOC_Os05g08800 | Os05g0180500 | - | Detail |
| C1H5g20076 | 5:4,011,392-4,022,845 | - | C2H5g05984 | CX5g036876 | LOC_Os05g08810 | Os05g0180600 | - | Detail |
| C1H5g03323 | 5:4,025,285-4,026,384 | + | C2H5g03050 | CX5g037205 | LOC_Os05g08820 | Os05g0180700 | - | Detail |
| C1H5g21276 | 5:4,036,621-4,042,595 | + | C2H5g11956 | CX5g037851 | LOC_Os05g08840 | Os05g0181000 | - | Detail |
| C1H5g29149 | 5:4,046,721-4,047,724 | - | C2H5g06572 | CX5g037202 | LOC_Os05g08854 | Os05g0181250 | - | Detail |
| C1H5g20825 | 5:4,075,430-4,079,590 | - | C2H5g07455 | CX10g010048 | - | - | - | Detail |
| C1H5g24930 | 5:4,088,887-4,091,504 | - | C2H5g23526 | CX5g038397 | LOC_Os05g08930 | Os05g0182100 | - | Detail |
| C1H5g10054 | 5:4,093,343-4,097,173 | - | C2H5g19515 | CX5g038109 | LOC_Os05g08950 | Os05g0182201 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g27247 | 3:20,223,239-20,224,497 | + | C1H3g28027 | CX3g026085 | LOC_Os03g39610 | Os03g0592500 | - | Detail |
| C2H3g20853 | 3:20,241,857-20,253,869 | - | C1H3g16999 | CX3g025924 | LOC_Os03g39640 | Os03g0593200 | - | Detail |
| C2H3g06535 | 3:20,283,881-20,287,652 | + | C1H3g23440 | CX3g029296 | LOC_Os03g39650 | Os03g0593600 | - | Detail |
| C2H3g05166 | 3:20,314,756-20,317,053 | + | C1H3g00424 | CX3g027675 | LOC_Os03g39690 | Os03g0594100 | - | Detail |
| C2H3g02607 | 3:20,318,332-20,319,601 | + | C1H3g00255 | CX3g030581 | LOC_Os03g39760 | Os03g0594900 | - | Detail |
| C2H3g28417 | 3:20,324,383-20,334,050 | - | C1H3g23343 | CX3g029540 | LOC_Os03g39710 | Os03g0594400 | OsMST2, OsSTP2 | Detail |
| C2H3g03244 | 3:20,336,281-20,342,175 | - | C1H3g02853 | CX3g025301 | LOC_Os03g39740 | Os03g0594700 | - | Detail |
| C2H3g04158 | 3:20,347,400-20,349,175 | + | C1H3g28781 | CX3g030581 | LOC_Os03g39760 | Os03g0594900 | - | Detail |
| C2H3g24679 | 3:20,352,846-20,354,206 | + | C1H3g23129 | CX3g029269 | LOC_Os03g39760 | Os03g0594900 | - | Detail |
| C2H3g17648 | 3:20,366,653-20,368,580 | + | C1H3g03263 | CX3g027467 | LOC_Os03g39820 | Os03g0595200 | - | Detail |
| C2H3g26444 | 3:20,369,523-20,370,488 | - | C1H3g23195 | CX3g025791 | LOC_Os03g39830 | Os03g0595300 | - | Detail |
| C2H3g03313 | 3:20,371,582-20,372,649 | - | C1H3g30408 | CX3g029922 | LOC_Os03g39850 | Os03g0595600 | - | Detail |
| C2H3g11519 | 3:20,382,432-20,386,252 | - | C1H3g25743 | CX3g026613 | LOC_Os03g39860 | Os03g0595800 | - | Detail |
| C2H3g18490 | 3:20,392,083-20,395,314 | - | C1H3g12058 | CX3g025071 | LOC_Os03g39910 | Os03g0596400 | - | Detail |
| C2H3g19432 | 3:20,408,589-20,409,446 | - | C1H3g14608 | CX3g028577 | LOC_Os03g40000 | Os03g0596800 | - | Detail |
| C2H3g02583 | 3:20,410,292-20,418,257 | - | C1H3g14273 | CX3g029325 | LOC_Os03g40010 | Os03g0596900 | - | Detail |
| C2H3g09880 | 3:20,435,880-20,438,108 | - | C1H3g16422 | CX3g030669 | LOC_Os03g40020 | Os03g0597200 | YSA | Detail |
| C2H3g23840 | 3:20,439,105-20,444,218 | - | C1H3g01921 | CX3g025021 | LOC_Os03g40040 | Os03g0597400 | - | Detail |
| C2H3g26940 | 3:20,445,817-20,446,342 | - | C1H3g24981 | - | - | - | - | Detail |
| C2H3g01791 | 3:20,449,996-20,451,965 | + | C1H3g16396 | CX3g029448 | LOC_Os03g40060 | Os03g0712600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |