| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g15273 | 5:3,831,454-3,832,605 | - | C2H5g24682 | CX5g040319 | LOC_Os05g08540 | Os05g0178100 | GA3OX1, OsGA3ox1, GA3ox1, OsGA3OX1 | Detail |
| C1H5g24081 | 5:3,834,404-3,835,475 | - | C2H5g23593 | CX5g038579 | LOC_Os05g08550 | - | - | Detail |
| C1H5g18416 | 5:3,836,538-3,838,831 | - | C2H5g22086 | - | - | Os05g0178300 | - | Detail |
| C1H5g28500 | 5:3,840,108-3,843,426 | - | C2H5g19576 | CX5g037936 | LOC_Os05g08560 | Os05g0178400 | - | Detail |
| C1H5g30909 | 5:3,849,015-3,851,278 | - | C2H5g23931 | CX5g039091 | LOC_Os05g08570 | Os05g0178600 | - | Detail |
| C1H5g11220 | 5:3,851,313-3,851,564 | - | C2H5g20930 | CX5g038646 | - | Os05g0178600 | - | Detail |
| C1H5g28275 | 5:3,874,896-3,878,806 | + | C2H5g20358 | CX5g038400 | LOC_Os05g08600 | Os05g0178900 | - | Detail |
| C1H5g03795 | 5:3,881,317-3,885,675 | + | C2H5g18108 | CX5g039771 | LOC_Os05g08610 | Os05g0179000 | - | Detail |
| C1H5g15516 | 5:3,896,992-3,897,444 | + | C2H5g28488 | - | LOC_Os08g23900 | - | - | Detail |
| C1H5g19959 | 5:3,919,187-3,921,168 | - | C2H5g17102 | CX5g037983 | LOC_Os05g08640 | Os05g0179300 | - | Detail |
| C1H5g21520 | 5:3,945,129-3,948,203 | + | C2H5g23753 | CX5g039721 | LOC_Os05g08730 | Os05g0179800 | - | Detail |
| C1H5g27830 | 5:3,989,851-3,993,349 | - | C2H5g25802 | CX5g038350 | LOC_Os05g08790 | Os05g0180400 | - | Detail |
| C1H5g02747 | 5:3,994,282-3,997,197 | - | C2H5g06685 | CX5g037875 | LOC_Os05g08800 | Os05g0180500 | - | Detail |
| C1H5g20076 | 5:4,011,392-4,022,845 | - | C2H5g05984 | CX5g036876 | LOC_Os05g08810 | Os05g0180600 | - | Detail |
| C1H5g03323 | 5:4,025,285-4,026,384 | + | C2H5g03050 | CX5g037205 | LOC_Os05g08820 | Os05g0180700 | - | Detail |
| C1H5g21276 | 5:4,036,621-4,042,595 | + | C2H5g11956 | CX5g037851 | LOC_Os05g08840 | Os05g0181000 | - | Detail |
| C1H5g29149 | 5:4,046,721-4,047,724 | - | C2H5g06572 | CX5g037202 | LOC_Os05g08854 | Os05g0181250 | - | Detail |
| C1H5g20825 | 5:4,075,430-4,079,590 | - | C2H5g07455 | CX10g010048 | - | - | - | Detail |
| C1H5g24930 | 5:4,088,887-4,091,504 | - | C2H5g23526 | CX5g038397 | LOC_Os05g08930 | Os05g0182100 | - | Detail |
| C1H5g10054 | 5:4,093,343-4,097,173 | - | C2H5g19515 | CX5g038109 | LOC_Os05g08950 | Os05g0182201 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g01599 | 9:14,273,618-14,273,881 | - | - | - | - | - | - | Detail |
| C2H9g28821 | 9:14,273,979-14,278,426 | + | C1H9g13901 | CX9g055414 | LOC_Os09g28050 | Os09g0453800 | - | Detail |
| C2H9g28225 | 9:14,283,783-14,285,326 | - | C1H9g00481 | CX9g057470 | LOC_Os09g28060 | Os09g0453900 | - | Detail |
| C2H9g17318 | 9:14,292,584-14,295,655 | + | C1H9g19719 | CX9g056919 | LOC_Os09g28100 | Os09g0454100 | - | Detail |
| C2H9g11334 | 9:14,295,835-14,300,896 | - | C1H9g10992 | CX9g057696 | LOC_Os09g28110 | Os09g0454200 | - | Detail |
| C2H9g24563 | 9:14,305,949-14,307,540 | + | C1H9g00491 | CX9g058006 | LOC_Os09g28120 | Os09g0454300 | - | Detail |
| C2H9g07945 | 9:14,310,076-14,311,661 | - | C1H9g26159 | CX9g056279 | LOC_Os09g28150 | Os09g0454500 | - | Detail |
| C2H9g22728 | 9:14,312,971-14,315,320 | + | C1H9g31005 | CX9g055863 | LOC_Os09g28160 | Os09g0454600 | - | Detail |
| C2H9g04822 | 9:14,335,591-14,336,866 | - | C1H9g16360 | CX9g056281 | LOC_Os09g28200 | Os09g0455200 | - | Detail |
| C2H9g30062 | 9:14,383,014-14,388,522 | + | C1H9g04635 | CX9g057536 | LOC_Os09g28300 | Os09g0456100 | - | Detail |
| C2H9g07506 | 9:14,390,837-14,394,842 | + | C1H9g15793 | CX9g057089 | LOC_Os09g28310 | Os09g0456200 | bZIP72, OsbZIP72 | Detail |
| C2H9g21988 | 9:14,414,499-14,419,491 | + | C1H9g07328 | CX9g057315 | LOC_Os09g28354 | Os09g0456800 | OsHsf23 | Detail |
| C2H9g18507 | 9:14,433,406-14,436,934 | - | C1H9g05942 | CX9g057565 | LOC_Os09g28390 | Os09g0457100 | OsABA8ox3 | Detail |
| C2H9g21808 | 9:14,459,400-14,459,848 | + | C1H9g27020 | CX9g057558 | LOC_Os09g28400 | Os09g0457400 | Amy3A | Detail |
| C2H9g27523 | 9:14,460,171-14,461,352 | + | C1H9g07321 | CX9g056155 | LOC_Os09g28400 | Os09g0457400 | Amy3A | Detail |
| C2H9g05118 | 9:14,466,878-14,468,369 | + | C1H9g27020 | CX9g057558 | LOC_Os09g28420 | Os09g0457600 | - | Detail |
| C2H9g27891 | 9:14,479,362-14,480,889 | + | C1H9g19292 | CX9g056052 | LOC_Os09g28420 | Os09g0457800 | Amy3C | Detail |
| C2H9g22499 | 9:14,485,995-14,488,511 | + | C1H9g17506 | CX9g056678 | LOC_Os09g28450 | Os09g0458000 | - | Detail |
| C2H9g12022 | 9:14,489,725-14,490,123 | + | - | - | - | - | - | Detail |
| C2H9g09485 | 9:14,492,440-14,494,175 | - | C1H9g21504 | CX9g055800 | LOC_Os09g28460 | Os09g0458100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |