| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g11504 | 5:3,649,274-3,649,921 | + | C2H5g21158 | CX5g039717 | LOC_Os05g07890 | Os05g0171200 | - | Detail |
| C1H5g14842 | 5:3,653,044-3,656,701 | + | C2H5g11975 | CX5g038572 | LOC_Os05g07900 | Os05g0171300 | - | Detail |
| C1H5g05810 | 5:3,669,433-3,674,100 | + | C2H5g28875 | CX5g040454 | LOC_Os05g07940 | Os05g0171900 | - | Detail |
| C1H5g06487 | 5:3,679,246-3,680,409 | - | C2H5g13205 | CX5g040831 | LOC_Os05g08010 | Os05g0172500 | - | Detail |
| C1H5g09811 | 5:3,682,475-3,683,767 | - | C2H5g23308 | CX5g040831 | LOC_Os05g07960 | Os05g0172100 | - | Detail |
| C1H5g28743 | 5:3,687,610-3,692,840 | - | C2H5g03657 | CX5g037090 | LOC_Os05g07980 | Os05g0172300 | - | Detail |
| C1H5g08333 | 5:3,696,830-3,700,752 | - | C2H5g03936 | CX5g038351 | LOC_Os05g08010 | Os05g0172500 | - | Detail |
| C1H5g18279 | 5:3,712,708-3,714,180 | + | - | CX5g038912 | - | - | - | Detail |
| C1H5g27827 | 5:3,717,017-3,719,965 | + | C2H5g07835 | CX5g040996 | LOC_Os05g08360 | Os05g0176000 | - | Detail |
| C1H5g22753 | 5:3,723,671-3,729,931 | - | C2H5g15897 | CX5g038136 | LOC_Os05g08370 | Os05g0176100 | - | Detail |
| C1H5g02275 | 5:3,739,188-3,741,590 | - | C2H5g24531 | CX5g040050 | LOC_Os05g08400 | Os05g0176400 | - | Detail |
| C1H5g15996 | 5:3,743,300-3,746,440 | - | C2H5g15763 | CX5g039063 | LOC_Os05g08410 | Os05g0176500 | - | Detail |
| C1H5g19736 | 5:3,746,652-3,749,108 | + | C2H5g16673 | CX5g039906 | LOC_Os05g08414 | Os05g0176600 | - | Detail |
| C1H5g07740 | 5:3,759,704-3,768,730 | - | C2H5g23491 | CX5g039146 | LOC_Os05g08430 | Os05g0176800 | BOR4, OsBOR4 | Detail |
| C1H5g26361 | 5:3,790,553-3,792,332 | + | C2H5g22969 | CX5g040267 | LOC_Os05g08450 | Os05g0177100 | - | Detail |
| C1H5g11821 | 5:3,800,983-3,803,223 | - | C2H5g14876 | CX5g040267 | LOC_Os05g08460 | Os05g0177400 | - | Detail |
| C1H5g18386 | 5:3,803,309-3,803,629 | - | C2H5g00540 | - | - | - | - | Detail |
| C1H5g12562 | 5:3,812,648-3,816,213 | + | C2H5g23095 | CX5g040475 | LOC_Os05g08490 | Os05g0177800 | - | Detail |
| C1H5g05273 | 5:3,823,371-3,828,084 | + | C2H5g03109 | CX5g039674 | LOC_Os05g08530 | Os05g0178000 | - | Detail |
| C1H5g26746 | 5:3,830,915-3,831,382 | - | C2H5g08820 | CX5g040319 | LOC_Os05g08540 | Os05g0178100 | GA3OX1, OsGA3ox1, GA3ox1, OsGA3OX1 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g08295 | 3:30,670,835-30,671,290 | - | C1H3g22193 | CX3g026143 | LOC_Os03g58850 | Os03g0803100 | - | Detail |
| C2H3g05041 | 3:30,675,168-30,676,369 | - | C1H3g05018 | CX3g028924 | LOC_Os03g58870 | Os03g0803200 | - | Detail |
| C2H3g16436 | 3:30,676,611-30,679,303 | - | C1H3g28908 | CX3g027844 | LOC_Os03g58880 | Os03g0803500 | - | Detail |
| C2H3g25525 | 3:30,680,257-30,682,274 | - | C1H3g17883 | CX3g027844 | LOC_Os03g58890 | Os03g0803500 | - | Detail |
| C2H3g12180 | 3:30,683,419-30,686,569 | - | C1H3g28909 | CX3g027632 | LOC_Os03g58900 | Os03g0803600 | - | Detail |
| C2H3g20910 | 3:30,687,680-30,703,020 | - | C1H3g08097 | CX3g029942 | LOC_Os03g58910 | Os03g0803800 | - | Detail |
| C2H3g11137 | 3:30,703,514-30,708,174 | - | C1H3g06667 | CX3g027632 | LOC_Os03g58920 | Os03g0803900 | - | Detail |
| C2H3g08052 | 3:30,710,689-30,713,313 | + | C1H3g13889 | CX3g025337 | LOC_Os03g58930 | Os03g0804100 | - | Detail |
| C2H3g30090 | 3:30,720,625-30,722,294 | + | C1H3g18947 | CX3g027592 | LOC_Os03g58940 | Os03g0804200 | - | Detail |
| C2H3g10876 | 3:30,725,550-30,730,766 | - | C1H3g08908 | CX3g024943 | LOC_Os03g58960 | Os03g0804300 | - | Detail |
| C2H3g27290 | 3:30,731,937-30,737,625 | + | C1H3g16246 | CX3g027330 | LOC_Os03g58970 | Os03g0804400 | - | Detail |
| C2H3g08677 | 3:30,744,914-30,750,150 | + | C1H3g07772 | CX3g028935 | LOC_Os03g59020 | Os03g0804800 | - | Detail |
| C2H3g02565 | 3:30,751,483-30,753,439 | - | C1H3g18006 | CX3g027095 | LOC_Os03g59030 | Os03g0804900 | - | Detail |
| C2H3g15440 | 3:30,755,448-30,758,142 | - | - | - | - | - | - | Detail |
| C2H3g23943 | 3:30,759,539-30,767,081 | + | C1H3g15435 | CX3g030857 | LOC_Os03g59040 | Os03g0805100 | - | Detail |
| C2H3g11637 | 3:30,767,141-30,772,442 | - | C1H3g07263 | CX3g025026 | LOC_Os03g59050 | Os03g0805200 | - | Detail |
| C2H3g13249 | 3:30,777,430-30,781,964 | + | C1H3g20361 | CX3g030776 | LOC_Os03g59060 | Os03g0805300 | OsPP2A-2 | Detail |
| C2H3g08127 | 3:30,783,431-30,786,056 | - | C1H3g19091 | CX3g031092 | LOC_Os03g59070 | Os03g0805400 | - | Detail |
| C2H3g28737 | 3:30,787,549-30,792,417 | - | C1H3g12066 | CX3g028812 | LOC_Os03g59080 | Os03g0805500 | - | Detail |
| C2H3g24931 | 3:30,794,551-30,796,778 | + | C1H3g30858 | CX3g030524 | LOC_Os03g59110 | Os03g0805600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |