| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g11504 | 5:3,649,274-3,649,921 | + | C2H5g21158 | CX5g039717 | LOC_Os05g07890 | Os05g0171200 | - | Detail |
| C1H5g14842 | 5:3,653,044-3,656,701 | + | C2H5g11975 | CX5g038572 | LOC_Os05g07900 | Os05g0171300 | - | Detail |
| C1H5g05810 | 5:3,669,433-3,674,100 | + | C2H5g28875 | CX5g040454 | LOC_Os05g07940 | Os05g0171900 | - | Detail |
| C1H5g06487 | 5:3,679,246-3,680,409 | - | C2H5g13205 | CX5g040831 | LOC_Os05g08010 | Os05g0172500 | - | Detail |
| C1H5g09811 | 5:3,682,475-3,683,767 | - | C2H5g23308 | CX5g040831 | LOC_Os05g07960 | Os05g0172100 | - | Detail |
| C1H5g28743 | 5:3,687,610-3,692,840 | - | C2H5g03657 | CX5g037090 | LOC_Os05g07980 | Os05g0172300 | - | Detail |
| C1H5g08333 | 5:3,696,830-3,700,752 | - | C2H5g03936 | CX5g038351 | LOC_Os05g08010 | Os05g0172500 | - | Detail |
| C1H5g18279 | 5:3,712,708-3,714,180 | + | - | CX5g038912 | - | - | - | Detail |
| C1H5g27827 | 5:3,717,017-3,719,965 | + | C2H5g07835 | CX5g040996 | LOC_Os05g08360 | Os05g0176000 | - | Detail |
| C1H5g22753 | 5:3,723,671-3,729,931 | - | C2H5g15897 | CX5g038136 | LOC_Os05g08370 | Os05g0176100 | - | Detail |
| C1H5g02275 | 5:3,739,188-3,741,590 | - | C2H5g24531 | CX5g040050 | LOC_Os05g08400 | Os05g0176400 | - | Detail |
| C1H5g15996 | 5:3,743,300-3,746,440 | - | C2H5g15763 | CX5g039063 | LOC_Os05g08410 | Os05g0176500 | - | Detail |
| C1H5g19736 | 5:3,746,652-3,749,108 | + | C2H5g16673 | CX5g039906 | LOC_Os05g08414 | Os05g0176600 | - | Detail |
| C1H5g07740 | 5:3,759,704-3,768,730 | - | C2H5g23491 | CX5g039146 | LOC_Os05g08430 | Os05g0176800 | BOR4, OsBOR4 | Detail |
| C1H5g26361 | 5:3,790,553-3,792,332 | + | C2H5g22969 | CX5g040267 | LOC_Os05g08450 | Os05g0177100 | - | Detail |
| C1H5g11821 | 5:3,800,983-3,803,223 | - | C2H5g14876 | CX5g040267 | LOC_Os05g08460 | Os05g0177400 | - | Detail |
| C1H5g18386 | 5:3,803,309-3,803,629 | - | C2H5g00540 | - | - | - | - | Detail |
| C1H5g12562 | 5:3,812,648-3,816,213 | + | C2H5g23095 | CX5g040475 | LOC_Os05g08490 | Os05g0177800 | - | Detail |
| C1H5g05273 | 5:3,823,371-3,828,084 | + | C2H5g03109 | CX5g039674 | LOC_Os05g08530 | Os05g0178000 | - | Detail |
| C1H5g26746 | 5:3,830,915-3,831,382 | - | C2H5g08820 | CX5g040319 | LOC_Os05g08540 | Os05g0178100 | GA3OX1, OsGA3ox1, GA3ox1, OsGA3OX1 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H10g06371 | 10:3,105,691-3,106,683 | - | C1H10g29778 | CX10g010233 | LOC_Os10g06770 | Os10g0157200 | - | Detail |
| C2H10g27893 | 10:3,107,065-3,108,048 | + | C1H10g22998 | CX10g007316 | LOC_Os10g06950 | Os10g0156200 | - | Detail |
| C2H10g00733 | 10:3,119,013-3,119,546 | + | C1H10g14111 | CX10g007397 | - | - | - | Detail |
| C2H10g23459 | 10:3,125,008-3,126,006 | + | C1H10g23831 | CX10g008431 | LOC_Os10g06930 | Os10g0157200 | - | Detail |
| C2H10g07388 | 10:3,129,764-3,129,988 | + | C1H10g13968 | CX10g007546 | LOC_Os10g06939 | Os10g0157300 | - | Detail |
| C2H10g30185 | 10:3,132,639-3,133,613 | - | C1H10g22998 | CX10g007316 | LOC_Os10g06800 | Os10g0156200 | - | Detail |
| C2H10g11850 | 10:3,135,968-3,136,591 | + | - | CX10g010850 | LOC_Os10g06790 | - | - | Detail |
| C2H10g27880 | 10:3,152,394-3,153,252 | - | C1H10g14027 | - | - | - | - | Detail |
| C2H10g21648 | 10:3,154,699-3,155,068 | - | - | - | - | - | - | Detail |
| C2H10g14676 | 10:3,206,754-3,208,400 | - | C1H10g06114 | CX10g008243 | LOC_Os10g07010 | Os10g0416200 | ONI2, OsCUT9 | Detail |
| C2H10g06253 | 10:3,250,002-3,251,982 | + | C1H10g13939 | CX10g008838 | LOC_Os10g07040 | Os10g0158400 | ARAS1 | Detail |
| C2H10g11035 | 10:3,281,262-3,283,227 | - | C1H10g09447 | CX10g010481 | LOC_Os10g07200 | Os10g0159600 | - | Detail |
| C2H10g12030 | 10:3,287,201-3,288,874 | - | C1H10g26056 | CX10g010481 | LOC_Os10g07210 | Os10g0159700 | OsCIA | Detail |
| C2H10g09868 | 10:3,294,377-3,301,513 | - | C1H10g00740 | CX10g010457 | LOC_Os10g07229 | Os10g0159800 | - | Detail |
| C2H10g11184 | 10:3,321,461-3,331,669 | - | C1H10g10330 | CX10g010726 | LOC_Os10g07270 | Os10g0160000 | - | Detail |
| C2H10g19578 | 10:3,340,692-3,343,123 | - | C1H10g06800 | CX10g010543 | LOC_Os10g07290 | Os10g0160100 | - | Detail |
| C2H10g20121 | 10:3,358,963-3,359,463 | + | C1H10g31141 | CX10g009040 | LOC_Os10g07340 | Os10g0160600 | - | Detail |
| C2H10g11745 | 10:3,382,210-3,382,664 | - | C1H10g02440 | CX10g009768 | LOC_Os10g07380 | Os10g0160700 | - | Detail |
| C2H10g11222 | 10:3,391,258-3,394,910 | - | C1H10g00381 | CX10g007787 | LOC_Os10g07400 | Os10g0161400 | - | Detail |
| C2H10g18664 | 10:3,409,625-3,410,883 | - | - | CX10g007379 | LOC_Os10g07420 | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |