| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g10645 | 5:3,231,214-3,232,500 | - | C2H5g12125 | CX5g039947 | LOC_Os05g07010 | Os05g0162800 | - | Detail |
| C1H5g21362 | 5:3,245,212-3,252,952 | + | C2H5g12999 | CX5g036788 | LOC_Os05g07030 | Os05g0163000 | - | Detail |
| C1H5g28911 | 5:3,253,470-3,257,779 | - | C2H5g16153 | CX5g037977 | LOC_Os05g07040 | Os05g0163100 | - | Detail |
| C1H5g18411 | 5:3,260,359-3,270,843 | - | C2H5g03965 | CX5g040279 | LOC_Os05g07050 | Os05g0163250 | - | Detail |
| C1H5g11075 | 5:3,274,530-3,277,051 | - | C2H5g04935 | CX5g037910 | LOC_Os05g07070 | Os05g0163400 | - | Detail |
| C1H5g20466 | 5:3,286,299-3,290,583 | - | C2H5g00170 | CX5g038895 | LOC_Os05g07090 | Os05g0163700 | - | Detail |
| C1H5g09469 | 5:3,299,611-3,301,145 | + | C2H5g23603 | CX5g038094 | LOC_Os05g07120 | Os05g0163900 | - | Detail |
| C1H5g27443 | 5:3,304,708-3,313,015 | + | C2H5g20534 | CX5g038741 | LOC_Os05g07130 | Os05g0164100 | - | Detail |
| C1H5g31024 | 5:3,320,951-3,327,646 | - | C2H5g04936 | CX5g037379 | LOC_Os05g07200 | Os05g0146900 | - | Detail |
| C1H5g05167 | 5:3,333,073-3,336,097 | - | C2H5g19390 | CX5g039548 | LOC_Os05g07210 | Os05g0164800 | - | Detail |
| C1H5g24618 | 5:3,338,250-3,344,695 | - | C2H5g25207 | CX5g037261 | LOC_Os05g07220 | Os05g0164900 | OsNRP4 | Detail |
| C1H5g06265 | 5:3,366,205-3,369,051 | + | C2H5g18692 | CX5g037840 | LOC_Os05g07260 | Os05g0165400 | - | Detail |
| C1H5g20042 | 5:3,370,360-3,372,614 | - | C2H5g16692 | CX5g038880 | LOC_Os05g07270 | Os05g0165450 | - | Detail |
| C1H5g24502 | 5:3,405,618-3,407,280 | - | C2H5g15984 | CX5g038084 | LOC_Os05g07420 | Os05g0166300 | SDRLK-35 | Detail |
| C1H5g02115 | 5:3,412,082-3,414,496 | - | C2H5g05162 | CX5g038084 | LOC_Os05g07450 | Os05g0166600 | SDRLK-36 | Detail |
| C1H5g15476 | 5:3,423,114-3,424,395 | - | C2H5g05162 | CX5g038084 | LOC_Os05g07470 | Os05g0166900 | SDRLP-9 | Detail |
| C1H5g29782 | 5:3,466,968-3,471,026 | - | C2H5g29353 | CX5g036835 | LOC_Os05g07626 | Os05g0168200 | - | Detail |
| C1H5g13498 | 5:3,492,982-3,496,722 | - | C2H5g25838 | CX5g040579 | LOC_Os05g07632 | Os05g0168300 | - | Detail |
| C1H5g21705 | 5:3,498,669-3,501,180 | + | C2H5g09777 | CX5g038149 | LOC_Os05g07640 | Os05g0168400 | - | Detail |
| C1H5g19416 | 5:3,503,112-3,505,899 | - | C2H5g10524 | CX5g037349 | LOC_Os05g07650 | Os05g0168500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g02435 | 4:26,718,889-26,720,819 | + | C1H4g11906 | CX4g031886 | LOC_Os04g52361 | Os04g0613500 | - | Detail |
| C2H4g14262 | 4:26,724,353-26,728,915 | - | C1H4g03528 | CX4g033920 | LOC_Os04g52370 | Os04g0613700 | UAP2 | Detail |
| C2H4g30596 | 4:26,734,579-26,740,509 | - | C1H4g12683 | CX4g033615 | LOC_Os04g52380 | Os04g0613800 | - | Detail |
| C2H4g10814 | 4:26,743,828-26,748,949 | - | C1H4g15444 | CX4g032046 | LOC_Os04g52390 | Os04g0613900 | - | Detail |
| C2H4g02940 | 4:26,754,868-26,757,310 | + | C1H4g09621 | CX4g033364 | LOC_Os04g52400 | Os04g0614000 | - | Detail |
| C2H4g14823 | 4:26,758,946-26,760,350 | + | C1H4g18002 | CX4g033138 | LOC_Os04g52410 | Os04g0614100 | - | Detail |
| C2H4g28997 | 4:26,763,313-26,766,976 | + | C1H4g00068 | CX4g031526 | LOC_Os04g52420 | Os04g0616900 | - | Detail |
| C2H4g06699 | 4:26,770,988-26,772,512 | + | C1H4g05036 | - | - | Os04g0614300 | - | Detail |
| C2H4g17218 | 4:26,775,472-26,781,526 | + | C1H4g02712 | CX4g035904 | LOC_Os04g52450 | Os04g0614600 | - | Detail |
| C2H4g10708 | 4:26,790,164-26,799,292 | + | C1H4g17515 | CX4g035957 | LOC_Os04g52460 | Os04g0614700 | - | Detail |
| C2H4g23243 | 4:26,811,933-26,816,868 | + | C1H4g20369 | CX4g036351 | LOC_Os04g52479 | Os04g0615000 | NAL1, nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4 | Detail |
| C2H4g24013 | 4:26,817,995-26,822,447 | + | C1H4g29702 | CX4g034949 | LOC_Os04g52500 | Os04g0615100 | - | Detail |
| C2H4g04550 | 4:26,823,039-26,823,723 | - | C1H4g06180 | - | LOC_Os04g52504 | Os04g0615200 | - | Detail |
| C2H4g11553 | 4:26,826,153-26,829,725 | + | C1H4g16195 | CX4g031653 | LOC_Os04g52520 | Os04g0615500 | - | Detail |
| C2H4g12331 | 4:26,830,483-26,831,606 | + | C1H4g22078 | CX4g031949 | LOC_Os04g52530 | Os04g0615600 | - | Detail |
| C2H4g15420 | 4:26,843,505-26,848,072 | + | C1H4g15848 | CX4g034962 | LOC_Os04g52540 | Os04g0615700 | OsAGO2 | Detail |
| C2H4g00576 | 4:26,849,148-26,854,139 | + | C1H4g23171 | CX4g031812 | LOC_Os04g52550 | Os04g0615800 | - | Detail |
| C2H4g30305 | 4:26,854,437-26,858,817 | - | C1H4g27864 | CX4g035991 | LOC_Os04g52560 | Os04g0615900 | - | Detail |
| C2H4g12428 | 4:26,857,632-26,858,214 | + | - | - | - | - | - | Detail |
| C2H4g21361 | 4:26,858,288-26,858,792 | + | - | - | - | Os04g0615850 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |