| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g10645 | 5:3,231,214-3,232,500 | - | C2H5g12125 | CX5g039947 | LOC_Os05g07010 | Os05g0162800 | - | Detail |
| C1H5g21362 | 5:3,245,212-3,252,952 | + | C2H5g12999 | CX5g036788 | LOC_Os05g07030 | Os05g0163000 | - | Detail |
| C1H5g28911 | 5:3,253,470-3,257,779 | - | C2H5g16153 | CX5g037977 | LOC_Os05g07040 | Os05g0163100 | - | Detail |
| C1H5g18411 | 5:3,260,359-3,270,843 | - | C2H5g03965 | CX5g040279 | LOC_Os05g07050 | Os05g0163250 | - | Detail |
| C1H5g11075 | 5:3,274,530-3,277,051 | - | C2H5g04935 | CX5g037910 | LOC_Os05g07070 | Os05g0163400 | - | Detail |
| C1H5g20466 | 5:3,286,299-3,290,583 | - | C2H5g00170 | CX5g038895 | LOC_Os05g07090 | Os05g0163700 | - | Detail |
| C1H5g09469 | 5:3,299,611-3,301,145 | + | C2H5g23603 | CX5g038094 | LOC_Os05g07120 | Os05g0163900 | - | Detail |
| C1H5g27443 | 5:3,304,708-3,313,015 | + | C2H5g20534 | CX5g038741 | LOC_Os05g07130 | Os05g0164100 | - | Detail |
| C1H5g31024 | 5:3,320,951-3,327,646 | - | C2H5g04936 | CX5g037379 | LOC_Os05g07200 | Os05g0146900 | - | Detail |
| C1H5g05167 | 5:3,333,073-3,336,097 | - | C2H5g19390 | CX5g039548 | LOC_Os05g07210 | Os05g0164800 | - | Detail |
| C1H5g24618 | 5:3,338,250-3,344,695 | - | C2H5g25207 | CX5g037261 | LOC_Os05g07220 | Os05g0164900 | OsNRP4 | Detail |
| C1H5g06265 | 5:3,366,205-3,369,051 | + | C2H5g18692 | CX5g037840 | LOC_Os05g07260 | Os05g0165400 | - | Detail |
| C1H5g20042 | 5:3,370,360-3,372,614 | - | C2H5g16692 | CX5g038880 | LOC_Os05g07270 | Os05g0165450 | - | Detail |
| C1H5g24502 | 5:3,405,618-3,407,280 | - | C2H5g15984 | CX5g038084 | LOC_Os05g07420 | Os05g0166300 | SDRLK-35 | Detail |
| C1H5g02115 | 5:3,412,082-3,414,496 | - | C2H5g05162 | CX5g038084 | LOC_Os05g07450 | Os05g0166600 | SDRLK-36 | Detail |
| C1H5g15476 | 5:3,423,114-3,424,395 | - | C2H5g05162 | CX5g038084 | LOC_Os05g07470 | Os05g0166900 | SDRLP-9 | Detail |
| C1H5g29782 | 5:3,466,968-3,471,026 | - | C2H5g29353 | CX5g036835 | LOC_Os05g07626 | Os05g0168200 | - | Detail |
| C1H5g13498 | 5:3,492,982-3,496,722 | - | C2H5g25838 | CX5g040579 | LOC_Os05g07632 | Os05g0168300 | - | Detail |
| C1H5g21705 | 5:3,498,669-3,501,180 | + | C2H5g09777 | CX5g038149 | LOC_Os05g07640 | Os05g0168400 | - | Detail |
| C1H5g19416 | 5:3,503,112-3,505,899 | - | C2H5g10524 | CX5g037349 | LOC_Os05g07650 | Os05g0168500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g27265 | 3:8,406,296-8,413,114 | + | C1H3g22706 | CX3g028994 | LOC_Os03g17210 | Os03g0280700 | - | Detail |
| C2H3g20835 | 3:8,414,698-8,415,657 | + | C1H3g01230 | CX3g029125 | LOC_Os03g17220 | Os03g0280750 | - | Detail |
| C2H3g25701 | 3:8,416,159-8,419,177 | - | C1H3g29688 | CX3g025025 | LOC_Os03g17230 | Os03g0280800 | OsUXS1 | Detail |
| C2H3g19709 | 3:8,420,304-8,423,679 | + | C1H3g02805 | CX3g031048 | LOC_Os03g17240 | Os03g0281000 | - | Detail |
| C2H3g01163 | 3:8,426,934-8,429,275 | + | C1H3g19384 | CX3g028226 | LOC_Os03g17250 | Os03g0281100 | - | Detail |
| C2H3g30239 | 3:8,433,479-8,434,423 | - | C1H3g05247 | CX3g026165 | LOC_Os03g17260 | Os03g0281201 | - | Detail |
| C2H3g10844 | 3:8,435,961-8,444,241 | - | C1H3g09869 | CX3g025004 | LOC_Os03g17270 | Os03g0281300 | - | Detail |
| C2H3g22572 | 3:8,445,096-8,447,903 | - | C1H3g20489 | CX3g030681 | LOC_Os03g14100 | Os03g0378500 | Os2R_MYB37 | Detail |
| C2H3g23238 | 3:8,455,311-8,457,977 | + | C1H3g05953 | CX3g030928 | LOC_Os03g17300 | Os03g0281500 | OsCrRLK1L7 | Detail |
| C2H3g13223 | 3:8,458,066-8,464,430 | - | C1H3g23808 | CX3g030523 | LOC_Os03g17310 | Os03g0281600 | OsECA1 | Detail |
| C2H3g28841 | 3:8,469,216-8,473,827 | - | C1H3g08368 | CX3g026907 | LOC_Os03g17340 | Os03g0281800 | - | Detail |
| C2H3g02883 | 3:8,476,487-8,478,850 | + | C1H3g04312 | CX3g027101 | LOC_Os03g17350 | Os03g0281900 | ABCG5, OsABCG5, RCN1/OsABCG5 | Detail |
| C2H3g04384 | 3:8,484,137-8,486,437 | + | C1H3g07058 | CX3g025177 | LOC_Os03g17370 | Os03g0281900 | ABCG5, OsABCG5, RCN1/OsABCG5 | Detail |
| C2H3g12323 | 3:8,495,135-8,500,989 | - | - | - | - | - | - | Detail |
| C2H3g12675 | 3:8,515,622-8,516,839 | + | C1H3g15208 | CX3g027572 | LOC_Os03g17432 | Os03g0282700 | - | Detail |
| C2H3g17220 | 3:8,517,221-8,519,724 | - | C1H3g13015 | CX3g026586 | LOC_Os03g17440 | Os03g0282800 | - | Detail |
| C2H3g11550 | 3:8,520,256-8,523,120 | + | C1H3g25350 | CX3g027144 | LOC_Os03g17450 | Os03g0282900 | - | Detail |
| C2H3g03924 | 3:8,524,219-8,525,364 | - | C1H3g12499 | - | LOC_Os03g17460 | Os03g0283000 | - | Detail |
| C2H3g06812 | 3:8,526,764-8,529,124 | - | C1H3g12499 | CX3g029922 | LOC_Os03g17470 | Os03g0283100 | - | Detail |
| C2H3g13775 | 3:8,532,126-8,534,265 | - | C1H3g26286 | CX3g029922 | LOC_Os03g17480 | Os03g0283200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |