| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g21635 | 5:1,800,625-1,801,726 | + | C2H5g10317 | CX5g038822 | LOC_Os05g04470 | Os05g0135200 | - | Detail |
| C1H5g11348 | 5:1,806,814-1,808,174 | + | C2H5g12500 | CX5g038822 | LOC_Os05g04490 | Os05g0135400 | OsPRX70 | Detail |
| C1H5g11788 | 5:1,813,487-1,815,667 | + | C2H5g16100 | CX5g038822 | LOC_Os05g04500 | Os05g0135500 | - | Detail |
| C1H5g05411 | 5:1,823,550-1,824,740 | + | C2H1g10329 | CX5g039963 | LOC_Os05g04510 | Os05g0135700 | - | Detail |
| C1H5g15318 | 5:1,829,349-1,833,577 | + | C2H5g15340 | CX5g039240 | LOC_Os05g04520 | Os05g0135800 | RLCK178, OsPti1a, OsRLCK178 | Detail |
| C1H5g22825 | 5:1,834,109-1,836,299 | - | C2H5g09071 | CX5g040556 | LOC_Os05g04530 | Os05g0135900 | - | Detail |
| C1H5g04500 | 5:1,841,006-1,842,757 | + | C2H5g21536 | - | - | - | - | Detail |
| C1H5g10755 | 5:1,855,741-1,859,524 | - | C2H5g01548 | CX5g039210 | LOC_Os05g04550 | Os05g0136200 | - | Detail |
| C1H5g22395 | 5:1,864,782-1,869,273 | + | - | - | - | Os05g0136400 | - | Detail |
| C1H5g30580 | 5:1,888,889-1,895,075 | + | C2H5g23155 | CX5g040521 | LOC_Os05g04584 | Os05g0136900 | OsPMT2, OsAT3 | Detail |
| C1H5g18480 | 5:1,908,700-1,914,968 | + | C2H5g06046 | CX5g040420 | LOC_Os05g04610 | Os05g0137200 | - | Detail |
| C1H5g19392 | 5:1,915,781-1,917,452 | + | C2H5g14079 | CX5g039843 | LOC_Os05g04620 | Os05g0137300 | - | Detail |
| C1H5g26357 | 5:1,918,487-1,922,420 | + | C2H5g14963 | CX5g040603 | LOC_Os05g04630 | Os05g0137400 | - | Detail |
| C1H5g12317 | 5:1,922,878-1,928,299 | - | C2H5g23559 | CX5g036724 | LOC_Os05g04640 | Os05g0137500 | OsWRKY5 | Detail |
| C1H5g04306 | 5:1,939,992-1,941,266 | + | C2H5g03222 | CX5g037574 | LOC_Os05g04650 | Os05g0137600 | - | Detail |
| C1H5g13155 | 5:1,941,560-1,943,068 | - | C2H5g28363 | - | LOC_Os05g04660 | Os05g0137700 | - | Detail |
| C1H5g04433 | 5:1,960,400-1,960,992 | - | C2H5g07352 | CX1g002314 | LOC_Os05g04700 | Os05g0138300 | OsLti6b | Detail |
| C1H5g25088 | 5:1,984,002-1,985,777 | + | C2H5g19962 | CX5g037589 | LOC_Os05g04740 | Os05g0139100 | APG | Detail |
| C1H5g25511 | 5:1,988,776-1,989,975 | - | C2H5g25266 | CX5g037123 | LOC_Os05g04750 | Os05g0139200 | - | Detail |
| C1H5g18751 | 5:1,997,995-1,999,179 | - | C2H5g23665 | CX5g037123 | LOC_Os05g04770 | Os05g0139300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g16412 | 3:8,536,317-8,539,001 | + | C1H3g04825 | CX3g025299 | LOC_Os03g17490 | Os03g0283300 | - | Detail |
| C2H3g25427 | 3:8,540,073-8,542,069 | - | C1H3g31389 | CX3g029292 | LOC_Os03g17500 | Os03g0283400 | - | Detail |
| C2H3g26100 | 3:8,545,546-8,547,342 | - | C1H3g29978 | CX3g030457 | LOC_Os03g17510 | Os03g0283500 | - | Detail |
| C2H3g10500 | 3:8,547,644-8,551,927 | - | C1H3g13527 | CX3g030456 | LOC_Os03g17520 | Os03g0283600 | - | Detail |
| C2H3g23371 | 3:8,562,735-8,570,128 | + | C1H3g19722 | CX3g026672 | LOC_Os03g17540 | Os03g0283800 | - | Detail |
| C2H3g29700 | 3:8,575,417-8,578,781 | - | C1H3g11797 | CX3g029803 | LOC_Os03g17550 | Os03g0283900 | - | Detail |
| C2H3g23379 | 3:8,578,835-8,582,071 | + | C1H3g07283 | CX3g025210 | LOC_Os03g17560 | Os03g0284000 | - | Detail |
| C2H3g10813 | 3:8,582,674-8,591,967 | - | C1H3g27931 | CX3g025348 | LOC_Os03g17570 | Os03g0284100 | OsPRR73, OsCCT11 | Detail |
| C2H3g28337 | 3:8,602,238-8,602,906 | - | C1H3g12560 | CX3g026952 | LOC_Os03g17580 | Os03g0284400 | - | Detail |
| C2H3g30073 | 3:8,604,510-8,608,088 | - | C1H3g02152 | CX3g030728 | LOC_Os03g17590 | Os03g0284500 | - | Detail |
| C2H3g08600 | 3:8,608,868-8,611,833 | + | C1H3g05023 | CX3g026963 | LOC_Os03g17600 | Os03g0284600 | - | Detail |
| C2H3g03614 | 3:8,614,271-8,615,676 | + | C1H3g06994 | CX3g025121 | - | Os03g0284700 | - | Detail |
| C2H3g12259 | 3:8,616,844-8,618,163 | + | C1H3g21431 | CX3g025050 | LOC_Os03g17610 | Os03g0284800 | TOP6A3 | Detail |
| C2H3g11357 | 3:8,618,693-8,632,387 | - | C1H3g26561 | CX3g026635 | LOC_Os03g17634 | Os03g0284900 | - | Detail |
| C2H3g28206 | 3:8,633,086-8,635,359 | + | C1H3g30930 | CX3g031354 | LOC_Os03g17660 | Os03g0285100 | - | Detail |
| C2H3g03876 | 3:8,637,543-8,637,710 | + | C1H3g11566 | CX3g026969 | LOC_Os03g17670 | Os03g0285200 | - | Detail |
| C2H3g05962 | 3:8,641,796-8,641,999 | + | C1H3g09547 | - | LOC_Os03g17680 | Os03g0285300 | - | Detail |
| C2H3g06105 | 3:8,651,135-8,654,478 | + | C1H3g07669 | CX3g026553 | LOC_Os03g17690 | Os03g0285700 | OsAPXa, OsAPX1 | Detail |
| C2H3g17399 | 3:8,655,394-8,658,115 | - | C1H3g30823 | CX3g029338 | LOC_Os03g17700 | Os03g0285800 | - | Detail |
| C2H3g05165 | 3:8,660,950-8,664,020 | - | C1H3g12993 | CX3g029635 | LOC_Os03g17710 | Os03g0285900 | OsRS2Z38 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |