| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g17694 | 5:1,387,037-1,392,794 | - | C2H5g16712 | CX5g039622 | LOC_Os05g03640 | Os05g0127500 | - | Detail |
| C1H5g12303 | 5:1,415,004-1,416,476 | + | C2H5g05001 | CX5g040566 | LOC_Os05g03750 | Os05g0128100 | - | Detail |
| C1H5g14002 | 5:1,429,621-1,431,545 | - | C2H5g10735 | CX5g039214 | LOC_Os05g03770 | Os05g0128300 | - | Detail |
| C1H5g27203 | 5:1,437,526-1,440,847 | - | C2H5g15512 | CX5g038112 | LOC_Os05g03780 | Os05g0128400 | OsMTP1 | Detail |
| C1H5g26071 | 5:1,450,527-1,454,746 | + | C2H5g12644 | CX5g037779 | LOC_Os05g03820 | Os05g0129000 | - | Detail |
| C1H5g17726 | 5:1,457,853-1,459,708 | + | C2H5g20670 | CX5g036800 | LOC_Os05g03830 | Os05g0129100 | - | Detail |
| C1H5g20738 | 5:1,460,007-1,462,175 | - | C2H5g08741 | CX5g040768 | LOC_Os05g03840 | Os05g0129200 | - | Detail |
| C1H5g14331 | 5:1,494,591-1,500,309 | - | C2H5g24745 | CX5g038179 | LOC_Os05g03884 | Os05g0129700 | Oskn2, OSH71, Oskn2/OSH71 | Detail |
| C1H5g16799 | 5:1,506,515-1,508,333 | - | C2H5g23667 | - | - | - | - | Detail |
| C1H5g11198 | 5:1,513,727-1,514,565 | + | C2H5g10940 | CX5g037909 | LOC_Os05g03900 | Os05g0129800 | - | Detail |
| C1H5g15292 | 5:1,515,259-1,519,290 | - | C2H5g13765 | CX5g038918 | LOC_Os05g03910 | Os05g0129900 | - | Detail |
| C1H5g09306 | 5:1,522,797-1,526,818 | + | C2H5g20349 | CX5g036768 | LOC_Os05g03920 | Os05g0130100 | - | Detail |
| C1H5g02682 | 5:1,541,276-1,542,253 | - | C2H5g13879 | - | - | - | - | Detail |
| C1H5g31896 | 5:1,558,184-1,566,344 | - | C2H5g28718 | CX5g040404 | LOC_Os05g03972 | Os05g0130400 | - | Detail |
| C1H5g15210 | 5:1,573,177-1,573,586 | - | C2H5g08536 | - | - | Os05g0130500 | - | Detail |
| C1H5g13927 | 5:1,578,202-1,582,694 | - | C2H5g17204 | CX5g040242 | LOC_Os05g04020 | Os05g0130400 | - | Detail |
| C1H5g19982 | 5:1,584,559-1,585,021 | + | C2H5g23034 | CX5g038388 | - | - | - | Detail |
| C1H5g21167 | 5:1,586,510-1,587,802 | + | C2H5g10179 | - | - | - | - | Detail |
| C1H5g11003 | 5:1,594,377-1,596,806 | - | C2H5g12456 | - | LOC_Os05g04070 | Os05g0131100 | - | Detail |
| C1H5g23202 | 5:1,599,408-1,603,800 | - | C2H5g08847 | - | LOC_Os05g04110 | Os05g0131401 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g21601 | 3:1,101,382-1,102,831 | + | C1H3g27844 | CX3g026041 | LOC_Os03g03140 | Os03g0123200 | - | Detail |
| C2H3g04889 | 3:1,105,886-1,109,785 | + | C1H3g09795 | CX3g029979 | LOC_Os03g03150 | Os03g0123300 | - | Detail |
| C2H3g00396 | 3:1,118,577-1,124,034 | + | C1H3g14139 | CX3g026340 | LOC_Os03g03164 | Os03g0123500 | HOS66, HOS66S | Detail |
| C2H3g00632 | 3:1,125,113-1,128,275 | - | C1H3g07667 | CX3g027409 | LOC_Os03g03180 | Os03g0123600 | - | Detail |
| C2H3g19198 | 3:1,131,242-1,132,201 | - | C1H3g01390 | CX3g025593 | LOC_Os11g34910 | Os11g0550300 | - | Detail |
| C2H3g13822 | 3:1,136,027-1,137,821 | + | C1H3g08918 | CX3g025457 | LOC_Os03g03200 | Os03g0123800 | - | Detail |
| C2H3g17363 | 3:1,139,674-1,140,372 | + | C1H3g08025 | CX3g029809 | LOC_Os02g13020 | - | - | Detail |
| C2H3g11416 | 3:1,149,380-1,155,297 | + | C1H3g22053 | CX3g025586 | LOC_Os03g03260 | Os03g0124000 | OsHB22 | Detail |
| C2H3g23812 | 3:1,157,950-1,159,621 | + | C1H3g12842 | CX3g029945 | LOC_Os03g03270 | Os03g0124100 | - | Detail |
| C2H3g17495 | 3:1,161,542-1,164,223 | + | C1H3g06423 | CX3g029915 | LOC_Os03g03280 | Os03g0124200 | - | Detail |
| C2H3g27072 | 3:1,165,734-1,167,134 | + | C1H3g21157 | CX3g027531 | LOC_Os03g03290 | Os03g0124300 | - | Detail |
| C2H3g24607 | 3:1,174,136-1,175,014 | + | C1H3g07613 | CX3g026326 | LOC_Os03g03320 | Os03g0124500 | - | Detail |
| C2H3g11584 | 3:1,184,324-1,187,483 | + | C1H3g04841 | CX3g030707 | LOC_Os03g03350 | Os03g0124900 | OsPG1 | Detail |
| C2H3g17248 | 3:1,187,480-1,189,011 | - | C1H3g23961 | CX3g028338 | LOC_Os03g03360 | Os03g0125000 | - | Detail |
| C2H3g15002 | 3:1,190,373-1,192,792 | - | C1H3g31110 | CX3g029957 | LOC_Os03g03370 | Os03g0125100 | DSM2, OsBCH1, OsHYD3 | Detail |
| C2H3g15732 | 3:1,198,489-1,205,837 | + | C1H3g17673 | CX3g026725 | LOC_Os03g03390 | Os03g0125300 | - | Detail |
| C2H3g14454 | 3:1,210,249-1,214,765 | + | C1H3g28194 | CX3g029384 | LOC_Os03g03410 | Os03g0125600 | - | Detail |
| C2H3g24007 | 3:1,218,289-1,221,134 | - | C1H3g27909 | CX3g031344 | LOC_Os03g03420 | Os03g0125700 | - | Detail |
| C2H3g10898 | 3:1,222,357-1,222,747 | + | - | - | - | - | - | Detail |
| C2H3g15544 | 3:1,229,309-1,234,862 | + | C1H3g30116 | CX3g029108 | LOC_Os03g03430 | Os03g0125800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |