| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g00412 | 1:1,205,291-1,207,738 | + | C2H1g24576 | CX1g003465 | LOC_Os01g03660 | Os01g0127400 | - | Detail |
| C1H1g25838 | 1:1,209,203-1,209,889 | + | C2H1g17865 | CX1g002042 | LOC_Os01g03720 | Os01g0127450 | - | Detail |
| C1H1g17663 | 1:1,210,419-1,211,515 | + | C2H1g02319 | CX1g005179 | LOC_Os01g03670 | Os01g0127500 | OsTKPR2 | Detail |
| C1H1g24827 | 1:1,215,246-1,217,557 | + | C2H1g03781 | CX1g006285 | LOC_Os01g02760 | Os01g0127700 | - | Detail |
| C1H1g05668 | 1:1,217,661-1,218,315 | + | C2H1g03781 | CX1g006285 | LOC_Os01g03690 | Os01g0117400 | - | Detail |
| C1H1g08835 | 1:1,225,922-1,230,986 | + | C2H1g13836 | CX1g004218 | LOC_Os01g03710 | Os01g0127900 | - | Detail |
| C1H1g25654 | 1:1,241,292-1,242,522 | - | C2H1g25959 | CX1g002896 | LOC_Os01g03720 | Os01g0128000 | MYB1, Os2R_MYB1 | Detail |
| C1H1g31764 | 1:1,254,615-1,256,427 | - | C2H1g01385 | CX1g004405 | LOC_Os01g03740 | Os01g0128100 | - | Detail |
| C1H1g04042 | 1:1,257,095-1,260,002 | + | C2H1g18960 | CX1g004550 | LOC_Os01g03730 | Os01g0128200 | - | Detail |
| C1H1g30874 | 1:1,260,240-1,261,552 | - | C2H1g15883 | CX1g002239 | LOC_Os01g03750 | Os01g0128300 | MHZ4 | Detail |
| C1H1g07436 | 1:1,262,139-1,267,477 | - | C2H1g19347 | CX1g006333 | LOC_Os01g03760 | Os01g0128400 | - | Detail |
| C1H1g20521 | 1:1,272,265-1,280,309 | + | C2H1g18545 | CX1g003056 | LOC_Os01g03820 | Os01g0128800 | - | Detail |
| C1H1g27481 | 1:1,292,873-1,294,279 | + | C2H1g10390 | CX1g002103 | LOC_Os01g03840 | Os01g0129200 | SL1, sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB | Detail |
| C1H1g30507 | 1:1,306,551-1,309,571 | - | C2H1g17049 | CX1g003490 | LOC_Os01g03870 | Os01g0129500 | - | Detail |
| C1H1g11492 | 1:1,322,229-1,323,238 | + | C2H1g13371 | CX1g006241 | LOC_Os01g03890 | Os01g0129600 | - | Detail |
| C1H1g30416 | 1:1,349,867-1,352,853 | - | C2H1g29639 | CX1g005809 | LOC_Os01g03914 | Os01g0130000 | - | Detail |
| C1H1g04895 | 1:1,357,467-1,357,897 | - | C2H1g15465 | - | LOC_Os01g03914 | - | - | Detail |
| C1H1g15284 | 1:1,383,194-1,387,792 | + | C2H1g02978 | CX1g003798 | LOC_Os01g03950 | Os01g0130400 | - | Detail |
| C1H1g17044 | 1:1,417,733-1,418,275 | + | C2H1g14763 | - | - | - | - | Detail |
| C1H1g07180 | 1:1,419,589-1,420,156 | + | C2H1g14763 | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g29022 | 1:18,955,100-18,959,235 | + | C1H1g31630 | CX1g005274 | LOC_Os01g37560 | Os01g0556400 | - | Detail |
| C2H1g00425 | 1:18,981,281-18,987,423 | + | C1H1g17519 | CX1g006555 | LOC_Os01g37590 | Os01g0556700 | - | Detail |
| C2H1g12776 | 1:18,988,159-18,993,114 | - | C1H1g00158 | CX1g000936 | LOC_Os01g37600 | Os01g0556800 | - | Detail |
| C2H1g21486 | 1:19,007,062-19,007,946 | - | C1H1g06316 | CX1g003371 | LOC_Os01g37630 | Os01g0557100 | - | Detail |
| C2H1g23763 | 1:19,023,006-19,028,666 | - | C1H1g17066 | CX1g000131 | LOC_Os01g37690 | Os01g0557500 | OsCAX1a | Detail |
| C2H1g06830 | 1:19,058,685-19,064,526 | + | C1H1g26457 | CX1g000875 | LOC_Os01g37760 | Os01g0558200 | - | Detail |
| C2H1g08019 | 1:19,064,948-19,068,087 | - | C1H1g06402 | CX1g000488 | LOC_Os01g37770 | Os01g0558300 | - | Detail |
| C2H1g18167 | 1:19,078,878-19,082,718 | + | C1H1g15919 | CX1g001083 | LOC_Os01g37790 | Os01g0558500 | - | Detail |
| C2H1g19481 | 1:19,083,609-19,086,101 | - | C1H1g24378 | CX1g002871 | LOC_Os01g37800 | Os01g0558600 | - | Detail |
| C2H1g02629 | 1:19,092,002-19,095,337 | - | C1H1g26268 | CX1g000094 | LOC_Os01g37820 | Os01g0558800 | - | Detail |
| C2H1g25024 | 1:19,100,397-19,108,751 | + | C1H1g26154 | CX1g002185 | LOC_Os01g37825 | Os01g0558900 | - | Detail |
| C2H1g22293 | 1:19,109,559-19,114,331 | + | C1H1g23221 | CX1g005822 | LOC_Os01g37832 | Os01g0559000 | - | Detail |
| C2H1g19302 | 1:19,118,079-19,122,223 | + | C1H1g29674 | CX1g000202 | LOC_Os01g37837 | Os01g0559100 | - | Detail |
| C2H1g01229 | 1:19,124,104-19,126,731 | + | C1H1g09716 | CX1g007154 | LOC_Os01g37842 | Os01g0559200 | - | Detail |
| C2H1g20640 | 1:19,132,867-19,135,226 | + | C1H1g22599 | CX1g002304 | LOC_Os01g37850 | Os01g0559300 | - | Detail |
| C2H1g12740 | 1:19,138,391-19,144,232 | + | C1H1g25483 | CX1g002284 | LOC_Os01g37870 | Os01g0559500 | WSL | Detail |
| C2H1g20416 | 1:19,159,206-19,164,112 | + | C1H1g09753 | CX1g001668 | LOC_Os01g37910 | Os01g0559600 | - | Detail |
| C2H1g27085 | 1:19,185,146-19,185,748 | - | - | - | - | - | - | Detail |
| C2H1g03829 | 1:19,189,152-19,194,320 | - | C1H1g31264 | CX1g000591 | LOC_Os01g37960 | Os01g0560000 | - | Detail |
| C2H1g09836 | 1:19,199,149-19,202,334 | + | C1H1g27095 | CX1g005030 | LOC_Os01g37980 | Os01g0560200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |