| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g00412 | 1:1,205,291-1,207,738 | + | C2H1g24576 | CX1g003465 | LOC_Os01g03660 | Os01g0127400 | - | Detail |
| C1H1g25838 | 1:1,209,203-1,209,889 | + | C2H1g17865 | CX1g002042 | LOC_Os01g03720 | Os01g0127450 | - | Detail |
| C1H1g17663 | 1:1,210,419-1,211,515 | + | C2H1g02319 | CX1g005179 | LOC_Os01g03670 | Os01g0127500 | OsTKPR2 | Detail |
| C1H1g24827 | 1:1,215,246-1,217,557 | + | C2H1g03781 | CX1g006285 | LOC_Os01g02760 | Os01g0127700 | - | Detail |
| C1H1g05668 | 1:1,217,661-1,218,315 | + | C2H1g03781 | CX1g006285 | LOC_Os01g03690 | Os01g0117400 | - | Detail |
| C1H1g08835 | 1:1,225,922-1,230,986 | + | C2H1g13836 | CX1g004218 | LOC_Os01g03710 | Os01g0127900 | - | Detail |
| C1H1g25654 | 1:1,241,292-1,242,522 | - | C2H1g25959 | CX1g002896 | LOC_Os01g03720 | Os01g0128000 | MYB1, Os2R_MYB1 | Detail |
| C1H1g31764 | 1:1,254,615-1,256,427 | - | C2H1g01385 | CX1g004405 | LOC_Os01g03740 | Os01g0128100 | - | Detail |
| C1H1g04042 | 1:1,257,095-1,260,002 | + | C2H1g18960 | CX1g004550 | LOC_Os01g03730 | Os01g0128200 | - | Detail |
| C1H1g30874 | 1:1,260,240-1,261,552 | - | C2H1g15883 | CX1g002239 | LOC_Os01g03750 | Os01g0128300 | MHZ4 | Detail |
| C1H1g07436 | 1:1,262,139-1,267,477 | - | C2H1g19347 | CX1g006333 | LOC_Os01g03760 | Os01g0128400 | - | Detail |
| C1H1g20521 | 1:1,272,265-1,280,309 | + | C2H1g18545 | CX1g003056 | LOC_Os01g03820 | Os01g0128800 | - | Detail |
| C1H1g27481 | 1:1,292,873-1,294,279 | + | C2H1g10390 | CX1g002103 | LOC_Os01g03840 | Os01g0129200 | SL1, sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB | Detail |
| C1H1g30507 | 1:1,306,551-1,309,571 | - | C2H1g17049 | CX1g003490 | LOC_Os01g03870 | Os01g0129500 | - | Detail |
| C1H1g11492 | 1:1,322,229-1,323,238 | + | C2H1g13371 | CX1g006241 | LOC_Os01g03890 | Os01g0129600 | - | Detail |
| C1H1g30416 | 1:1,349,867-1,352,853 | - | C2H1g29639 | CX1g005809 | LOC_Os01g03914 | Os01g0130000 | - | Detail |
| C1H1g04895 | 1:1,357,467-1,357,897 | - | C2H1g15465 | - | LOC_Os01g03914 | - | - | Detail |
| C1H1g15284 | 1:1,383,194-1,387,792 | + | C2H1g02978 | CX1g003798 | LOC_Os01g03950 | Os01g0130400 | - | Detail |
| C1H1g17044 | 1:1,417,733-1,418,275 | + | C2H1g14763 | - | - | - | - | Detail |
| C1H1g07180 | 1:1,419,589-1,420,156 | + | C2H1g14763 | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g26186 | 3:11,785,574-11,790,510 | - | C1H3g17947 | CX3g027882 | LOC_Os03g22800 | Os03g0351400 | - | Detail |
| C2H3g20435 | 3:11,816,196-11,817,722 | + | C1H3g29229 | CX3g027904 | LOC_Os03g22810 | Os03g0351500 | CSD1 | Detail |
| C2H3g14393 | 3:11,833,297-11,835,660 | - | C1H3g18570 | CX3g025092 | - | - | - | Detail |
| C2H3g15700 | 3:11,839,218-11,843,043 | + | C1H3g27962 | CX3g027668 | LOC_Os03g22870 | Os03g0352200 | - | Detail |
| C2H3g04437 | 3:11,843,634-11,846,602 | - | C1H3g04417 | CX3g025721 | LOC_Os03g22880 | Os03g0352300 | - | Detail |
| C2H3g25554 | 3:11,848,294-11,853,039 | + | C1H3g10842 | CX3g030381 | LOC_Os03g22890 | Os03g0352400 | OsNug2 | Detail |
| C2H3g13717 | 3:11,858,682-11,869,917 | + | C1H3g16038 | CX3g025999 | LOC_Os03g22900 | Os03g0352500 | OsINO80 | Detail |
| C2H3g17584 | 3:11,886,296-11,888,754 | - | C1H3g08430 | CX3g025916 | LOC_Os03g22950 | Os03g0352800 | OsMTACP2, CTB18 | Detail |
| C2H3g12615 | 3:11,890,640-11,891,671 | + | C1H3g07024 | CX3g029374 | LOC_Os03g22960 | Os03g0353000 | - | Detail |
| C2H3g04581 | 3:11,893,911-11,897,406 | + | C1H3g09018 | CX3g029843 | LOC_Os03g22990 | Os03g0353300 | - | Detail |
| C2H3g21766 | 3:11,897,409-11,897,645 | - | C1H3g12995 | CX3g027651 | LOC_Os03g23000 | Os03g0353333 | - | Detail |
| C2H3g01500 | 3:11,902,339-11,903,507 | + | C1H3g26840 | CX3g026671 | LOC_Os03g23010 | Os03g0353400 | - | Detail |
| C2H3g07846 | 3:11,907,459-11,909,361 | + | C1H3g22809 | CX3g029165 | LOC_Os03g23020 | Os03g0353500 | - | Detail |
| C2H3g26280 | 3:11,910,520-11,925,731 | + | C1H3g12732 | CX3g029602 | LOC_Os03g23030 | Os03g0353600 | OsAPT1 | Detail |
| C2H3g03041 | 3:11,929,416-11,930,867 | - | C1H3g22495 | CX3g029597 | LOC_Os03g23920 | Os03g0355300 | - | Detail |
| C2H3g25328 | 3:11,932,504-11,937,502 | + | C1H3g01916 | CX3g025017 | LOC_Os03g23935 | Os03g0355200 | - | Detail |
| C2H3g07529 | 3:11,939,830-11,940,795 | + | - | CX3g027961 | LOC_Os03g23940 | Os03g0355500 | - | Detail |
| C2H3g10284 | 3:11,941,275-11,947,568 | - | C1H3g22764 | CX3g025703 | LOC_Os03g23950 | Os03g0355600 | - | Detail |
| C2H3g06071 | 3:11,956,108-11,959,620 | + | C1H3g05770 | CX3g031073 | LOC_Os03g23960 | Os03g0355700 | - | Detail |
| C2H3g19901 | 3:11,960,275-11,962,367 | - | C1H3g06132 | CX3g030920 | LOC_Os03g23970 | Os03g0355800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |