| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g00412 | 1:1,205,291-1,207,738 | + | C2H1g24576 | CX1g003465 | LOC_Os01g03660 | Os01g0127400 | - | Detail |
| C1H1g25838 | 1:1,209,203-1,209,889 | + | C2H1g17865 | CX1g002042 | LOC_Os01g03720 | Os01g0127450 | - | Detail |
| C1H1g17663 | 1:1,210,419-1,211,515 | + | C2H1g02319 | CX1g005179 | LOC_Os01g03670 | Os01g0127500 | OsTKPR2 | Detail |
| C1H1g24827 | 1:1,215,246-1,217,557 | + | C2H1g03781 | CX1g006285 | LOC_Os01g02760 | Os01g0127700 | - | Detail |
| C1H1g05668 | 1:1,217,661-1,218,315 | + | C2H1g03781 | CX1g006285 | LOC_Os01g03690 | Os01g0117400 | - | Detail |
| C1H1g08835 | 1:1,225,922-1,230,986 | + | C2H1g13836 | CX1g004218 | LOC_Os01g03710 | Os01g0127900 | - | Detail |
| C1H1g25654 | 1:1,241,292-1,242,522 | - | C2H1g25959 | CX1g002896 | LOC_Os01g03720 | Os01g0128000 | MYB1, Os2R_MYB1 | Detail |
| C1H1g31764 | 1:1,254,615-1,256,427 | - | C2H1g01385 | CX1g004405 | LOC_Os01g03740 | Os01g0128100 | - | Detail |
| C1H1g04042 | 1:1,257,095-1,260,002 | + | C2H1g18960 | CX1g004550 | LOC_Os01g03730 | Os01g0128200 | - | Detail |
| C1H1g30874 | 1:1,260,240-1,261,552 | - | C2H1g15883 | CX1g002239 | LOC_Os01g03750 | Os01g0128300 | MHZ4 | Detail |
| C1H1g07436 | 1:1,262,139-1,267,477 | - | C2H1g19347 | CX1g006333 | LOC_Os01g03760 | Os01g0128400 | - | Detail |
| C1H1g20521 | 1:1,272,265-1,280,309 | + | C2H1g18545 | CX1g003056 | LOC_Os01g03820 | Os01g0128800 | - | Detail |
| C1H1g27481 | 1:1,292,873-1,294,279 | + | C2H1g10390 | CX1g002103 | LOC_Os01g03840 | Os01g0129200 | SL1, sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB | Detail |
| C1H1g30507 | 1:1,306,551-1,309,571 | - | C2H1g17049 | CX1g003490 | LOC_Os01g03870 | Os01g0129500 | - | Detail |
| C1H1g11492 | 1:1,322,229-1,323,238 | + | C2H1g13371 | CX1g006241 | LOC_Os01g03890 | Os01g0129600 | - | Detail |
| C1H1g30416 | 1:1,349,867-1,352,853 | - | C2H1g29639 | CX1g005809 | LOC_Os01g03914 | Os01g0130000 | - | Detail |
| C1H1g04895 | 1:1,357,467-1,357,897 | - | C2H1g15465 | - | LOC_Os01g03914 | - | - | Detail |
| C1H1g15284 | 1:1,383,194-1,387,792 | + | C2H1g02978 | CX1g003798 | LOC_Os01g03950 | Os01g0130400 | - | Detail |
| C1H1g17044 | 1:1,417,733-1,418,275 | + | C2H1g14763 | - | - | - | - | Detail |
| C1H1g07180 | 1:1,419,589-1,420,156 | + | C2H1g14763 | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g02809 | 3:2,382,989-2,384,382 | - | C1H3g28897 | CX3g026711 | LOC_Os03g05530 | Os03g0149300 | - | Detail |
| C2H3g07135 | 3:2,384,709-2,385,099 | - | C1H3g28897 | CX3g026711 | LOC_Os03g05530 | Os03g0149300 | - | Detail |
| C2H3g29786 | 3:2,389,090-2,391,982 | + | C1H3g27908 | CX3g029578 | LOC_Os03g05540 | Os03g0149400 | - | Detail |
| C2H3g29884 | 3:2,395,079-2,395,626 | + | C1H3g00677 | - | - | - | - | Detail |
| C2H3g01040 | 3:2,400,513-2,401,439 | - | C1H3g00185 | CX3g030199 | LOC_Os03g05560 | Os03g0149700 | - | Detail |
| C2H3g29045 | 3:2,408,018-2,408,917 | - | C1H3g00155 | CX3g028233 | LOC_Os03g05570 | Os03g0149800 | - | Detail |
| C2H3g13096 | 3:2,424,730-2,425,155 | + | C1H3g19498 | CX3g030128 | LOC_Os03g05590 | Os03g0150200 | OsAP23 | Detail |
| C2H3g29028 | 3:2,427,358-2,428,983 | + | C1H3g28178 | CX3g030522 | LOC_Os03g05610 | Os03g0150500 | - | Detail |
| C2H3g30077 | 3:2,430,807-2,432,390 | - | C1H3g29432 | CX3g029750 | LOC_Os03g05620 | Os03g0150600 | - | Detail |
| C2H3g00543 | 3:2,434,580-2,435,837 | + | C1H3g22703 | - | LOC_Os03g05630 | Os03g0150700 | - | Detail |
| C2H3g05251 | 3:2,436,029-2,436,640 | + | C1H3g31371 | CX3g024968 | LOC_Os03g05630 | Os03g0150700 | - | Detail |
| C2H3g19570 | 3:2,444,751-2,445,075 | + | C1H3g21603 | - | - | Os03g0150700 | - | Detail |
| C2H3g28429 | 3:2,446,347-2,447,933 | - | C1H3g04203 | CX3g028575 | LOC_Os03g05640 | Os03g0150800 | PT2, OsPT2, PTH1-2, OsPht1;2 | Detail |
| C2H3g24713 | 3:2,452,468-2,457,529 | - | C1H3g13409 | CX3g030168 | LOC_Os03g05660 | Os03g0151100 | - | Detail |
| C2H3g23634 | 3:2,461,313-2,469,594 | + | C1H3g18077 | CX3g028756 | LOC_Os03g05680 | Os03g0151300 | Se14 | Detail |
| C2H3g25123 | 3:2,469,992-2,470,303 | - | C1H3g12618 | CX3g027574 | LOC_Os03g05700 | Os03g0151500 | - | Detail |
| C2H3g19949 | 3:2,472,091-2,472,774 | - | C1H3g18071 | CX3g029524 | LOC_Os03g05710 | Os03g0151600 | - | Detail |
| C2H3g16820 | 3:2,473,799-2,479,561 | + | C1H3g05811 | CX3g027544 | LOC_Os03g05720 | Os03g0151700 | - | Detail |
| C2H3g19649 | 3:2,480,098-2,484,362 | - | C1H3g17815 | CX3g029565 | LOC_Os03g05730 | Os03g0151800 | - | Detail |
| C2H3g15451 | 3:2,485,113-2,488,078 | - | C1H3g06798 | CX3g027324 | LOC_Os03g05740 | Os03g0151900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |