| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g00412 | 1:1,205,291-1,207,738 | + | C2H1g24576 | CX1g003465 | LOC_Os01g03660 | Os01g0127400 | - | Detail |
| C1H1g25838 | 1:1,209,203-1,209,889 | + | C2H1g17865 | CX1g002042 | LOC_Os01g03720 | Os01g0127450 | - | Detail |
| C1H1g17663 | 1:1,210,419-1,211,515 | + | C2H1g02319 | CX1g005179 | LOC_Os01g03670 | Os01g0127500 | OsTKPR2 | Detail |
| C1H1g24827 | 1:1,215,246-1,217,557 | + | C2H1g03781 | CX1g006285 | LOC_Os01g02760 | Os01g0127700 | - | Detail |
| C1H1g05668 | 1:1,217,661-1,218,315 | + | C2H1g03781 | CX1g006285 | LOC_Os01g03690 | Os01g0117400 | - | Detail |
| C1H1g08835 | 1:1,225,922-1,230,986 | + | C2H1g13836 | CX1g004218 | LOC_Os01g03710 | Os01g0127900 | - | Detail |
| C1H1g25654 | 1:1,241,292-1,242,522 | - | C2H1g25959 | CX1g002896 | LOC_Os01g03720 | Os01g0128000 | MYB1, Os2R_MYB1 | Detail |
| C1H1g31764 | 1:1,254,615-1,256,427 | - | C2H1g01385 | CX1g004405 | LOC_Os01g03740 | Os01g0128100 | - | Detail |
| C1H1g04042 | 1:1,257,095-1,260,002 | + | C2H1g18960 | CX1g004550 | LOC_Os01g03730 | Os01g0128200 | - | Detail |
| C1H1g30874 | 1:1,260,240-1,261,552 | - | C2H1g15883 | CX1g002239 | LOC_Os01g03750 | Os01g0128300 | MHZ4 | Detail |
| C1H1g07436 | 1:1,262,139-1,267,477 | - | C2H1g19347 | CX1g006333 | LOC_Os01g03760 | Os01g0128400 | - | Detail |
| C1H1g20521 | 1:1,272,265-1,280,309 | + | C2H1g18545 | CX1g003056 | LOC_Os01g03820 | Os01g0128800 | - | Detail |
| C1H1g27481 | 1:1,292,873-1,294,279 | + | C2H1g10390 | CX1g002103 | LOC_Os01g03840 | Os01g0129200 | SL1, sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB | Detail |
| C1H1g30507 | 1:1,306,551-1,309,571 | - | C2H1g17049 | CX1g003490 | LOC_Os01g03870 | Os01g0129500 | - | Detail |
| C1H1g11492 | 1:1,322,229-1,323,238 | + | C2H1g13371 | CX1g006241 | LOC_Os01g03890 | Os01g0129600 | - | Detail |
| C1H1g30416 | 1:1,349,867-1,352,853 | - | C2H1g29639 | CX1g005809 | LOC_Os01g03914 | Os01g0130000 | - | Detail |
| C1H1g04895 | 1:1,357,467-1,357,897 | - | C2H1g15465 | - | LOC_Os01g03914 | - | - | Detail |
| C1H1g15284 | 1:1,383,194-1,387,792 | + | C2H1g02978 | CX1g003798 | LOC_Os01g03950 | Os01g0130400 | - | Detail |
| C1H1g17044 | 1:1,417,733-1,418,275 | + | C2H1g14763 | - | - | - | - | Detail |
| C1H1g07180 | 1:1,419,589-1,420,156 | + | C2H1g14763 | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g18802 | 1:7,673,207-7,676,639 | - | C1H1g03143 | CX1g004588 | LOC_Os01g15039 | Os01g0254300 | - | Detail |
| C2H1g03871 | 1:7,680,546-7,681,232 | + | C1H1g10601 | CX1g003840 | LOC_Os01g15060 | Os01g0254400 | - | Detail |
| C2H1g29201 | 1:7,685,349-7,685,921 | - | C1H1g10601 | CX1g002954 | LOC_Os01g15060 | Os01g0254850 | - | Detail |
| C2H1g08251 | 1:7,688,050-7,690,834 | - | C1H1g29530 | CX1g002064 | LOC_Os01g15110 | Os01g0254900 | OsSYP22 | Detail |
| C2H1g10250 | 1:7,691,217-7,691,429 | - | C1H1g29530 | CX1g002064 | LOC_Os01g15110 | Os01g0254900 | OsSYP22 | Detail |
| C2H1g19697 | 1:7,699,022-7,702,109 | + | C1H1g07953 | CX1g004642 | LOC_Os01g15120 | Os01g0255000 | - | Detail |
| C2H1g19369 | 1:7,703,861-7,705,381 | + | C1H1g19334 | CX1g000415 | LOC_Os01g15130 | Os01g0255100 | - | Detail |
| C2H1g30018 | 1:7,710,951-7,711,754 | - | C1H1g15730 | CX1g002492 | LOC_Os01g15229 | Os01g0250200 | - | Detail |
| C2H1g02996 | 1:7,727,207-7,728,721 | - | C1H1g20609 | CX1g002773 | LOC_Os01g15250 | Os01g0256300 | - | Detail |
| C2H1g05193 | 1:7,732,235-7,732,815 | + | C1H1g24551 | CX1g006760 | LOC_Os01g15260 | Os01g0256400 | - | Detail |
| C2H1g12743 | 1:7,738,223-7,738,546 | - | C1H1g25861 | CX1g001411 | LOC_Os01g21250 | Os01g0256500 | - | Detail |
| C2H1g04504 | 1:7,744,595-7,746,982 | - | C1H1g03986 | CX1g002798 | LOC_Os01g15290 | Os01g0256600 | - | Detail |
| C2H1g16200 | 1:7,749,859-7,750,855 | + | - | - | - | - | - | Detail |
| C2H1g26471 | 1:7,754,180-7,763,036 | - | C1H1g01100 | CX1g000086 | LOC_Os01g15300 | Os01g0256800 | - | Detail |
| C2H1g29381 | 1:7,763,986-7,770,526 | - | C1H1g16669 | CX1g006858 | LOC_Os01g15310 | Os01g0256900 | - | Detail |
| C2H1g25712 | 1:7,771,239-7,771,634 | - | C1H1g19001 | CX1g001834 | LOC_Os01g15320 | Os01g0257100 | - | Detail |
| C2H1g14179 | 1:7,774,098-7,774,553 | + | - | CX1g005442 | - | - | - | Detail |
| C2H1g04306 | 1:7,783,532-7,783,861 | - | C1H1g01623 | CX1g002380 | LOC_Os01g15340 | Os01g0257300 | OsRAA1 | Detail |
| C2H1g22921 | 1:7,792,822-7,797,576 | - | C1H1g30602 | CX1g004034 | LOC_Os01g15350 | Os01g0257400 | - | Detail |
| C2H1g06851 | 1:7,807,254-7,807,918 | + | C1H1g10160 | - | LOC_Os01g15448 | Os01g0258600 | DPL1 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |