| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g05932 | 5:924,833-928,799 | - | C2H5g20475 | CX5g039871 | LOC_Os05g02820 | Os05g0119700 | - | Detail |
| C1H5g25594 | 5:943,281-945,395 | - | C2H5g27318 | CX5g040974 | LOC_Os05g02880 | Os05g0120100 | - | Detail |
| C1H5g31585 | 5:977,467-982,443 | + | C2H5g09848 | CX5g037865 | LOC_Os05g02940 | Os05g0120700 | - | Detail |
| C1H5g20255 | 5:985,138-986,734 | + | C2H5g03610 | CX5g040092 | LOC_Os05g02970 | Os05g0120800 | - | Detail |
| C1H5g25679 | 5:997,164-998,437 | + | C2H5g24004 | CX5g038448 | LOC_Os05g02990 | Os05g0121000 | - | Detail |
| C1H5g01702 | 5:1,001,069-1,008,762 | + | C2H5g03745 | CX5g038251 | - | Os05g0121100 | - | Detail |
| C1H5g21915 | 5:1,012,216-1,016,443 | - | C2H5g13518 | CX5g038381 | LOC_Os05g03000 | Os05g0121200 | - | Detail |
| C1H5g23502 | 5:1,017,735-1,022,979 | + | C2H5g27724 | CX5g037956 | LOC_Os05g03020 | Os05g0121400 | - | Detail |
| C1H5g18884 | 5:1,030,945-1,035,254 | - | C2H5g29033 | CX5g038220 | LOC_Os05g03040 | Os05g0121600 | RSR1, OsTOE1, AP2/EREBP#090, AP2/EREBP90 | Detail |
| C1H5g22491 | 5:1,060,140-1,064,909 | - | C2H5g03539 | CX5g039481 | LOC_Os05g03050 | Os05g0121700 | - | Detail |
| C1H5g25689 | 5:1,071,694-1,075,687 | + | C2H5g07687 | CX5g038840 | LOC_Os05g03060 | Os05g0121800 | - | Detail |
| C1H5g18041 | 5:1,075,746-1,077,506 | - | C2H5g05750 | CX5g041093 | LOC_Os05g03070 | Os05g0121900 | - | Detail |
| C1H5g13312 | 5:1,086,909-1,095,059 | + | C2H5g19920 | CX5g040056 | LOC_Os05g03100 | Os05g0122400 | - | Detail |
| C1H5g19743 | 5:1,095,083-1,096,561 | - | C2H5g29150 | CX5g040504 | LOC_Os05g03110 | Os05g0122500 | - | Detail |
| C1H5g02473 | 5:1,104,967-1,108,773 | + | C2H5g04039 | CX5g037677 | LOC_Os05g03120 | Os05g0122600 | - | Detail |
| C1H5g18506 | 5:1,109,543-1,109,884 | - | C2H5g14986 | CX3g026690 | LOC_Os05g03130 | Os05g0122700 | - | Detail |
| C1H5g28175 | 5:1,120,308-1,124,274 | + | C2H5g02194 | CX5g039466 | LOC_Os05g03140 | Os05g0122800 | - | Detail |
| C1H5g12318 | 5:1,125,348-1,127,698 | - | C2H5g07267 | CX5g037843 | LOC_Os05g03150 | Os05g0122900 | OsBLE1 | Detail |
| C1H5g28350 | 5:1,132,427-1,132,855 | - | C2H5g27198 | CX5g040830 | LOC_Os05g03160 | Os05g0123000 | - | Detail |
| C1H5g07212 | 5:1,132,902-1,133,171 | - | C2H5g14651 | CX5g040717 | LOC_Os05g07270 | Os05g0417000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g24728 | 3:31,316,935-31,321,724 | - | C1H3g22167 | CX3g028800 | LOC_Os03g56130 | - | - | Detail |
| C2H3g06440 | 3:31,327,754-31,331,053 | + | C1H3g01200 | CX3g025954 | LOC_Os03g60430 | Os03g0818800 | - | Detail |
| C2H3g15854 | 3:31,340,058-31,344,258 | + | C1H3g02194 | CX3g025292 | LOC_Os03g60460 | Os03g0819100 | - | Detail |
| C2H3g14507 | 3:31,344,895-31,345,709 | + | C1H3g16913 | - | LOC_Os03g60470 | Os03g0819300 | - | Detail |
| C2H3g18275 | 3:31,347,289-31,349,216 | - | C1H3g00081 | CX3g026922 | LOC_Os03g60480 | Os03g0819400 | - | Detail |
| C2H3g02705 | 3:31,353,288-31,354,452 | - | C1H3g02338 | CX3g031046 | LOC_Os03g60509 | Os03g0819600 | - | Detail |
| C2H3g09845 | 3:31,358,386-31,361,160 | - | C1H3g07063 | CX3g025306 | LOC_Os03g60520 | Os03g0819700 | - | Detail |
| C2H3g16290 | 3:31,363,594-31,366,416 | + | C1H3g11685 | CX3g026585 | LOC_Os03g60530 | Os03g0819900 | - | Detail |
| C2H3g01855 | 3:31,369,076-31,375,527 | + | C1H3g13391 | CX3g025197 | LOC_Os03g60550 | Os03g0820100 | - | Detail |
| C2H3g30643 | 3:31,383,244-31,386,657 | + | C1H3g31889 | CX3g030735 | LOC_Os03g60580 | Os03g0820500 | OsADF3 | Detail |
| C2H3g14030 | 3:31,387,363-31,389,861 | + | C1H3g18878 | CX3g026527 | LOC_Os03g60580 | Os03g0820600 | - | Detail |
| C2H3g06884 | 3:31,390,753-31,394,065 | - | C1H3g26924 | CX3g029295 | LOC_Os03g60600 | Os03g0820700 | - | Detail |
| C2H3g20559 | 3:31,396,075-31,401,135 | - | C1H3g11416 | CX3g025531 | LOC_Os03g60610 | Os03g0820900 | - | Detail |
| C2H3g05607 | 3:31,403,570-31,408,330 | + | C1H3g28279 | CX3g027512 | LOC_Os03g60620 | Os03g0821100 | - | Detail |
| C2H3g25786 | 3:31,412,729-31,414,281 | + | C1H3g25995 | CX3g030377 | LOC_Os03g60630 | Os03g0821200 | - | Detail |
| C2H3g20031 | 3:31,428,765-31,429,098 | - | C1H3g30691 | CX3g029500 | - | - | - | Detail |
| C2H3g23674 | 3:31,430,739-31,434,322 | - | C1H3g24438 | CX3g027662 | LOC_Os03g60650 | Os03g0821300 | - | Detail |
| C2H3g24002 | 3:31,449,417-31,450,208 | + | - | CX3g031271 | LOC_Os03g60660 | Os03g0821550 | - | Detail |
| C2H3g16181 | 3:31,453,728-31,454,367 | - | - | CX3g026233 | - | - | - | Detail |
| C2H3g23136 | 3:31,455,272-31,458,425 | - | C1H3g12541 | CX3g026762 | LOC_Os03g60700 | Os03g0821800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |