| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g01268 | 4:30,925,276-30,925,707 | + | C2H4g15610 | - | - | Os04g0691600 | - | Detail |
| C1H4g29823 | 4:30,927,827-30,937,433 | - | C2H4g09678 | CX4g035435 | LOC_Os04g59510 | Os04g0691700 | - | Detail |
| C1H4g24974 | 4:30,937,075-30,937,323 | + | C2H4g25533 | - | - | - | - | Detail |
| C1H4g14998 | 4:30,943,419-30,946,460 | + | C2H4g29455 | CX4g035598 | LOC_Os04g59520 | Os04g0691800 | - | Detail |
| C1H4g13678 | 4:30,963,914-30,969,030 | + | C2H4g04978 | CX4g033130 | LOC_Os04g59540 | Os04g0691900 | - | Detail |
| C1H4g04015 | 4:30,969,315-30,971,946 | - | C2H4g28407 | CX4g031823 | LOC_Os04g59550 | Os04g0692000 | OsUGT1 | Detail |
| C1H4g24413 | 4:30,973,054-30,976,235 | - | C2H4g21280 | CX4g036186 | LOC_Os04g59560 | Os04g0692100 | - | Detail |
| C1H4g28170 | 4:30,976,344-30,978,545 | + | C2H4g27640 | CX4g033569 | LOC_Os04g59570 | Os04g0692200 | - | Detail |
| C1H4g17325 | 4:30,979,831-30,981,703 | - | C2H4g24464 | CX4g035439 | LOC_Os04g59580 | Os04g0692300 | - | Detail |
| C1H4g04446 | 4:30,983,938-30,988,131 | + | C2H4g23702 | CX4g032662 | LOC_Os04g59590 | Os04g0692400 | - | Detail |
| C1H4g10612 | 4:30,988,341-30,991,865 | + | C2H4g12817 | CX4g032652 | LOC_Os04g59600 | Os04g0692500 | - | Detail |
| C1H4g30618 | 4:30,992,191-30,993,115 | + | C2H4g22022 | CX4g031468 | LOC_Os04g59610 | Os04g0692600 | - | Detail |
| C1H4g21901 | 4:30,993,476-31,007,814 | - | C2H4g12422 | CX4g032746 | LOC_Os04g59624 | Os04g0692750 | ENL1, enl1 | Detail |
| C1H4g31227 | 4:31,010,327-31,013,461 | + | C2H4g05853 | CX4g032881 | LOC_Os04g59630 | Os04g0692800 | - | Detail |
| C1H4g07535 | 4:31,014,399-31,016,197 | + | C2H4g28247 | CX4g034118 | - | - | - | Detail |
| C1H4g19873 | 4:31,017,611-31,020,138 | - | C2H4g27143 | CX4g036051 | - | - | - | Detail |
| C1H4g00863 | 4:31,020,377-31,021,281 | - | C2H4g07206 | CX4g032375 | - | - | - | Detail |
| C1H4g30889 | 4:31,021,398-31,023,096 | + | C2H4g13259 | CX4g036354 | - | Os04g0693200 | - | Detail |
| C1H4g01478 | 4:31,030,869-31,033,993 | - | C2H4g15271 | CX4g033358 | - | - | - | Detail |
| C1H4g15633 | 4:31,035,327-31,042,346 | - | C2H4g00725 | CX4g032528 | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H8g21066 | 8:20,294,440-20,298,567 | + | C1H8g07271 | CX8g054252 | LOC_Os08g37820 | Os08g0484800 | - | Detail |
| C2H8g02429 | 8:20,305,319-20,306,308 | - | - | - | LOC_Os08g37840 | Os08g0485000 | - | Detail |
| C2H8g11309 | 8:20,316,438-20,323,570 | + | C1H8g08354 | CX8g054237 | LOC_Os08g37874 | Os08g0485400 | - | Detail |
| C2H8g09800 | 8:20,327,851-20,328,311 | + | C1H8g24443 | CX8g050461 | LOC_Os08g37890 | Os08g0485500 | RAE2, OsEPFL1, EPFL1, GAD1 | Detail |
| C2H8g22834 | 8:20,331,886-20,337,354 | + | C1H8g08175 | CX8g054267 | LOC_Os08g37904 | Os08g0485600 | - | Detail |
| C2H8g11998 | 8:20,345,869-20,352,164 | + | C1H8g13898 | CX8g053049 | LOC_Os08g37920 | Os08g0485700 | - | Detail |
| C2H8g20917 | 8:20,353,093-20,355,855 | - | C1H8g11808 | CX8g053483 | LOC_Os08g37930 | Os08g0485800 | - | Detail |
| C2H8g01955 | 8:20,357,441-20,360,495 | - | C1H8g21083 | CX8g052013 | LOC_Os08g37940 | Os08g0485900 | - | Detail |
| C2H8g06885 | 8:20,362,408-20,370,645 | + | C1H8g12876 | CX8g054609 | LOC_Os08g37950 | Os08g0486100 | - | Detail |
| C2H8g17660 | 8:20,371,756-20,374,662 | - | C1H8g09919 | CX8g050748 | LOC_Os08g37960 | Os08g0486200 | - | Detail |
| C2H8g28570 | 8:20,383,371-20,384,904 | - | C1H8g05150 | CX8g052173 | LOC_Os08g37970 | Os08g0486300 | Os2R_MYB80 | Detail |
| C2H8g10262 | 8:20,400,922-20,401,419 | + | C1H9g18707 | CX8g052825 | LOC_Os08g37990 | Os08g0486700 | - | Detail |
| C2H8g22845 | 8:20,405,636-20,408,083 | + | C1H8g06962 | CX8g052559 | LOC_Os08g38010 | Os08g0487000 | - | Detail |
| C2H8g02123 | 8:20,410,265-20,410,954 | - | C1H8g07010 | CX8g053523 | LOC_Os08g38020 | Os08g0487100 | - | Detail |
| C2H8g17510 | 8:20,427,743-20,430,762 | - | C1H8g09056 | CX8g053173 | LOC_Os08g38060 | Os08g0487500 | - | Detail |
| C2H8g21912 | 8:20,437,235-20,439,233 | + | C1H8g03415 | CX8g054700 | LOC_Os08g38080 | Os08g0487700 | - | Detail |
| C2H8g01365 | 8:20,440,173-20,444,679 | - | C1H8g23582 | CX8g051291 | LOC_Os08g38086 | Os08g0487800 | - | Detail |
| C2H8g04096 | 8:20,445,612-20,449,097 | - | C1H8g16452 | CX8g051898 | LOC_Os08g38092 | Os08g0487900 | - | Detail |
| C2H8g24896 | 8:20,456,733-20,458,202 | + | C1H8g23496 | CX8g051261 | LOC_Os08g38110 | Os08g0489100 | - | Detail |
| C2H8g03266 | 8:20,466,541-20,467,333 | - | - | CX8g053079 | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |