| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g14195 | 4:30,594,274-30,596,673 | - | C2H4g17883 | CX4g035667 | LOC_Os04g58830 | Os04g0685100 | - | Detail |
| C1H4g00056 | 4:30,602,478-30,606,565 | - | C2H4g08586 | CX4g035928 | LOC_Os04g58850 | Os04g0685300 | OsHin1 | Detail |
| C1H4g22677 | 4:30,615,349-30,621,081 | - | C2H4g10173 | CX4g034074 | LOC_Os04g58870 | Os04g0685500 | - | Detail |
| C1H4g12841 | 4:30,624,760-30,630,801 | - | C2H4g09863 | CX4g034074 | LOC_Os04g58880 | Os04g0685600 | OsEXO70A1, RLS2 | Detail |
| C1H4g24643 | 4:30,637,553-30,640,515 | + | C2H4g05284 | CX4g035298 | LOC_Os04g58900 | Os04g0685800 | - | Detail |
| C1H4g30748 | 4:30,642,674-30,646,459 | - | C2H4g20145 | CX4g033134 | LOC_Os04g58910 | Os04g0685900 | - | Detail |
| C1H4g08597 | 4:30,666,191-30,666,460 | - | C2H4g24662 | CX4g036614 | LOC_Os04g58940 | Os04g0686100 | - | Detail |
| C1H4g06869 | 4:30,669,283-30,676,723 | - | C2H4g20786 | CX4g033434 | LOC_Os04g58960 | Os04g0686200 | OsRLR4 | Detail |
| C1H4g27993 | 4:30,685,380-30,687,127 | - | C2H4g06556 | CX4g033160 | LOC_Os04g58980 | Os04g0686300 | - | Detail |
| C1H4g20559 | 4:30,687,897-30,691,816 | - | C2H4g09974 | CX4g034151 | LOC_Os04g58990 | Os04g0686500 | - | Detail |
| C1H4g22211 | 4:30,692,543-30,699,019 | - | C2H4g02812 | CX4g032982 | LOC_Os04g59000 | Os04g0686650 | - | Detail |
| C1H4g16557 | 4:30,718,709-30,722,587 | - | C2H4g05730 | CX4g033455 | LOC_Os04g59040 | Os04g0687100 | - | Detail |
| C1H4g25779 | 4:30,725,980-30,726,675 | + | C2H4g24423 | CX4g031409 | LOC_Os04g59050 | Os04g0687200 | - | Detail |
| C1H4g30754 | 4:30,727,929-30,731,126 | - | C2H4g17341 | CX4g033457 | LOC_Os04g59060 | Os04g0687300 | OsDjC46 | Detail |
| C1H4g02340 | 4:30,739,255-30,739,956 | + | C2H4g17357 | CX4g032584 | LOC_Os04g59120 | Os04g0687800 | - | Detail |
| C1H4g12124 | 4:30,741,141-30,742,088 | + | C2H4g17357 | CX4g032584 | LOC_Os04g59120 | Os04g0687800 | - | Detail |
| C1H4g28490 | 4:30,747,792-30,751,516 | + | C2H4g08207 | CX4g034877 | LOC_Os04g59130 | Os04g0687900 | - | Detail |
| C1H4g10712 | 4:30,759,674-30,760,969 | - | C2H4g15410 | - | LOC_Os04g59150 | Os04g0688100 | - | Detail |
| C1H4g16364 | 4:30,765,077-30,766,287 | - | C2H4g21064 | - | LOC_Os04g59160 | Os04g0688200 | - | Detail |
| C1H4g06961 | 4:30,768,768-30,769,955 | - | C2H4g21084 | - | LOC_Os04g59190 | Os04g0688300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g12275 | 1:4,873,374-4,873,817 | - | C1H1g19001 | CX1g000926 | LOC_Os01g10470 | Os01g0201400 | OsRALF17 | Detail |
| C2H1g03634 | 1:4,876,589-4,877,474 | - | C1H1g16523 | CX1g002271 | LOC_Os01g10480 | Os01g0201500 | - | Detail |
| C2H1g24699 | 1:4,882,789-4,883,106 | - | C1H1g23585 | CX1g003008 | LOC_Os01g10490 | Os01g0201600 | OsGAE1 | Detail |
| C2H1g28525 | 1:4,883,213-4,883,868 | - | C1H1g14400 | CX1g003008 | LOC_Os01g10490 | Os01g0201600 | OsGAE1 | Detail |
| C2H1g13721 | 1:4,892,989-4,895,492 | - | C1H1g15606 | CX1g006928 | LOC_Os01g10504 | Os01g0886200 | - | Detail |
| C2H1g12459 | 1:4,900,735-4,900,998 | - | C1H1g15606 | CX1g006928 | LOC_Os01g10504 | Os01g0201700 | RAG, MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1 | Detail |
| C2H1g19665 | 1:4,911,955-4,917,635 | - | C1H1g13227 | CX1g003430 | LOC_Os01g10520 | Os01g0201800 | - | Detail |
| C2H1g09694 | 1:4,923,671-4,931,460 | - | C1H1g22249 | CX1g006334 | LOC_Os01g10530 | Os01g0201900 | - | Detail |
| C2H1g26674 | 1:4,964,371-4,965,624 | + | C1H1g17903 | CX1g001589 | LOC_Os01g10580 | Os01g0202500 | - | Detail |
| C2H1g25575 | 1:4,971,914-4,972,368 | + | C1H1g18982 | - | - | Os01g0202601 | - | Detail |
| C2H1g11027 | 1:4,978,392-4,981,573 | + | C1H1g22813 | CX1g006160 | LOC_Os01g10590 | Os01g0202700 | - | Detail |
| C2H1g23331 | 1:4,988,516-4,991,314 | - | C1H1g30411 | CX1g001315 | LOC_Os01g10600 | Os01g0202800 | OsNIP1;2 | Detail |
| C2H1g21358 | 1:4,992,805-4,994,882 | - | C1H1g09441 | CX1g005369 | LOC_Os01g10610 | Os01g0203000 | - | Detail |
| C2H1g27421 | 1:5,000,254-5,002,198 | - | C1H1g13068 | CX1g004390 | LOC_Os01g10630 | Os01g0203300 | - | Detail |
| C2H1g21431 | 1:5,008,131-5,008,454 | + | - | CX1g004397 | LOC_Os01g10640 | Os01g0203400 | - | Detail |
| C2H1g16935 | 1:5,020,559-5,022,124 | - | C1H1g00815 | CX1g002059 | LOC_Os01g10680 | Os01g0203800 | - | Detail |
| C2H1g16705 | 1:5,041,036-5,045,561 | - | C1H1g30796 | CX1g005785 | LOC_Os01g10690 | Os01g0204000 | - | Detail |
| C2H1g09104 | 1:5,049,551-5,061,780 | - | C1H1g01843 | - | - | - | - | Detail |
| C2H1g25154 | 1:5,062,654-5,063,064 | - | - | CX1g004812 | LOC_Os01g10740 | - | - | Detail |
| C2H1g14777 | 1:5,063,389-5,063,692 | + | C1H1g24281 | CX1g003100 | LOC_Os01g10790 | Os01g0205100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |