| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g00659 | 4:30,433,747-30,436,563 | - | C2H4g25864 | - | LOC_Os04g58550 | Os04g0681900 | OsACBP4 | Detail |
| C1H4g09164 | 4:30,437,028-30,439,206 | - | C2H4g11364 | CX4g033932 | LOC_Os04g58555 | Os04g0681950 | - | Detail |
| C1H4g23612 | 4:30,439,731-30,444,270 | - | C2H4g24606 | CX4g032790 | LOC_Os04g58560 | Os04g0682000 | OsAtg4 | Detail |
| C1H4g13982 | 4:30,444,769-30,447,283 | - | C2H4g12424 | CX4g036630 | LOC_Os04g58564 | Os04g0682050 | OsDRE2b | Detail |
| C1H4g03764 | 4:30,449,159-30,450,707 | + | C2H4g09113 | CX4g032229 | LOC_Os04g58570 | Os04g0682100 | - | Detail |
| C1H4g13874 | 4:30,451,560-30,454,445 | + | C2H4g12704 | CX4g032668 | LOC_Os04g58580 | Os04g0682300 | - | Detail |
| C1H4g04791 | 4:30,455,452-30,459,846 | - | C2H4g12875 | CX4g036041 | LOC_Os04g58590 | Os04g0682400 | - | Detail |
| C1H4g28533 | 4:30,461,462-30,465,080 | + | C2H4g17181 | CX4g035113 | LOC_Os04g58600 | Os04g0682500 | - | Detail |
| C1H4g29653 | 4:30,468,760-30,486,074 | - | C2H4g03946 | CX4g034300 | LOC_Os04g58620 | Os04g0682800 | - | Detail |
| C1H4g01136 | 4:30,486,765-30,490,104 | - | C2H4g28695 | CX4g036644 | LOC_Os04g58640 | Os04g0683100 | - | Detail |
| C1H4g02161 | 4:30,501,257-30,503,589 | + | C2H4g18113 | CX4g033383 | LOC_Os04g58690 | Os04g0683500 | - | Detail |
| C1H4g12491 | 4:30,512,205-30,517,795 | + | C2H4g00628 | CX4g035511 | LOC_Os04g58700 | Os04g0683600 | - | Detail |
| C1H4g05282 | 4:30,519,328-30,521,281 | - | C2H4g20996 | CX4g034879 | LOC_Os04g58710 | Os04g0683700 | OsAAE3 | Detail |
| C1H4g11991 | 4:30,525,250-30,529,391 | + | - | - | - | - | - | Detail |
| C1H4g17079 | 4:30,529,919-30,531,076 | + | C2H4g00697 | CX4g033496 | - | Os04g0683850 | - | Detail |
| C1H4g07968 | 4:30,531,515-30,534,221 | - | C2H4g01840 | CX4g032610 | LOC_Os04g58730 | Os04g0683900 | - | Detail |
| C1H4g20128 | 4:30,551,123-30,558,001 | + | C2H4g26858 | CX4g033459 | LOC_Os04g58750 | Os04g0684200 | OsBSK3 | Detail |
| C1H4g02282 | 4:30,558,802-30,559,655 | + | C2H4g01802 | CX4g033405 | LOC_Os04g58760 | Os04g0684300 | OsCASP1 | Detail |
| C1H4g18219 | 4:30,562,619-30,573,678 | + | C2H4g02516 | CX4g031834 | LOC_Os04g58780 | Os04g0684500 | - | Detail |
| C1H4g26669 | 4:30,577,591-30,579,340 | + | C2H4g22761 | CX4g033643 | LOC_Os04g58800 | Os04g0684800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g25284 | 4:26,053,158-26,054,280 | - | C1H4g15893 | CX4g035889 | LOC_Os04g51140 | Os04g0600100 | - | Detail |
| C2H4g12319 | 4:26,054,891-26,057,188 | - | C1H4g02523 | CX4g035681 | LOC_Os04g51150 | Os04g0600200 | AOX1A, Ao1-1, AOX1a, OsAOX1a, AOX 1a | Detail |
| C2H4g13155 | 4:26,057,959-26,060,860 | - | C1H4g06092 | CX4g036218 | LOC_Os04g51160 | Os04g0600300 | AOX1B, AOX1b, OsAOX1b | Detail |
| C2H4g11382 | 4:26,062,604-26,064,996 | - | C1H4g28733 | CX4g036257 | LOC_Os04g51166 | Os04g0600400 | - | Detail |
| C2H4g16073 | 4:26,065,855-26,071,021 | - | C1H4g04973 | CX4g033183 | LOC_Os04g51172 | Os04g0600500 | OsBRXL3 | Detail |
| C2H4g00138 | 4:26,079,042-26,083,754 | - | C1H4g07853 | CX4g032625 | LOC_Os04g51180 | Os04g0600800 | COLD1 | Detail |
| C2H4g09942 | 4:26,085,183-26,089,337 | - | C1H4g08504 | CX4g033956 | LOC_Os04g51190 | Os04g0574500 | - | Detail |
| C2H4g25560 | 4:26,102,155-26,103,523 | - | C1H4g18677 | CX4g032272 | LOC_Os04g51240 | Os04g0601400 | - | Detail |
| C2H4g10254 | 4:26,104,987-26,107,216 | - | C1H4g11359 | CX4g033025 | LOC_Os04g51250 | Os04g0601500 | - | Detail |
| C2H4g14874 | 4:26,106,519-26,110,669 | + | C1H4g26178 | CX4g034624 | LOC_Os04g51260 | Os04g0602000 | - | Detail |
| C2H4g01351 | 4:26,111,323-26,112,177 | - | C1H4g02715 | CX4g036413 | LOC_Os04g51270 | Os04g0601700 | - | Detail |
| C2H4g08450 | 4:26,113,702-26,115,692 | + | C1H4g04277 | - | LOC_Os04g51280 | Os04g0601800 | WSP1 | Detail |
| C2H4g18195 | 4:26,116,346-26,119,282 | + | C1H4g31358 | CX4g031538 | LOC_Os04g51300 | Os04g0602100 | - | Detail |
| C2H4g21768 | 4:26,119,417-26,121,708 | - | C1H4g26391 | CX4g033882 | LOC_Os04g51310 | Os04g0602200 | - | Detail |
| C2H4g22043 | 4:26,123,267-26,125,534 | - | C1H4g19881 | CX4g033318 | LOC_Os04g51320 | Os04g0602300 | - | Detail |
| C2H4g12426 | 4:26,127,370-26,131,567 | - | C1H4g05144 | CX4g034293 | LOC_Os04g51330 | Os04g0602400 | - | Detail |
| C2H4g05437 | 4:26,134,548-26,138,254 | + | C1H4g22875 | CX4g033998 | LOC_Os04g51340 | Os04g0602500 | - | Detail |
| C2H4g15861 | 4:26,139,791-26,142,202 | + | C1H4g12838 | CX4g032956 | LOC_Os04g51350 | Os04g0602600 | MPR25 | Detail |
| C2H4g20183 | 4:26,143,347-26,145,256 | - | C1H4g06807 | CX4g034077 | LOC_Os04g51360 | Os04g0602700 | - | Detail |
| C2H4g18022 | 4:26,146,411-26,154,053 | - | C1H4g07013 | CX4g035673 | LOC_Os04g51370 | Os04g0602800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |