| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g24892 | 4:30,303,858-30,305,905 | - | C2H4g08572 | CX4g035752 | LOC_Os04g57880 | Os04g0675400 | - | Detail |
| C1H4g08555 | 4:30,307,760-30,327,090 | - | C2H4g13536 | CX4g033430 | - | Os04g0675300 | - | Detail |
| C1H4g02276 | 4:30,328,851-30,332,158 | + | - | - | - | - | - | Detail |
| C1H4g22329 | 4:30,338,972-30,345,021 | + | C2H4g07191 | CX4g034095 | LOC_Os04g57870 | Os04g0675000 | - | Detail |
| C1H4g31604 | 4:30,348,162-30,351,206 | + | C2H4g18901 | CX4g031749 | LOC_Os04g57860 | Os04g0674800 | OsRHC | Detail |
| C1H4g14424 | 4:30,355,200-30,357,315 | + | C2H4g08185 | CX4g034499 | LOC_Os04g57850 | Os04g0674700 | OsBIABP1 | Detail |
| C1H4g07465 | 4:30,355,570-30,357,211 | - | - | - | - | Os04g0674750 | - | Detail |
| C1H4g25678 | 4:30,357,935-30,361,697 | + | C2H4g22750 | CX4g034412 | LOC_Os04g57840 | Os04g0674600 | - | Detail |
| C1H4g26031 | 4:30,362,395-30,362,637 | - | - | - | - | - | - | Detail |
| C1H4g20705 | 4:30,363,561-30,364,090 | - | C2H4g19163 | - | LOC_Os04g57830 | Os04g0674500 | - | Detail |
| C1H4g14562 | 4:30,371,741-30,374,112 | - | C2H4g13778 | CX4g036032 | LOC_Os04g57819 | Os04g0674450 | - | Detail |
| C1H4g16815 | 4:30,376,101-30,378,488 | - | C2H4g23666 | - | - | - | - | Detail |
| C1H4g00743 | 4:30,380,358-30,385,057 | + | C2H4g26889 | CX4g032216 | LOC_Os04g58390 | Os04g0680400 | OsALN | Detail |
| C1H4g09052 | 4:30,387,278-30,392,432 | - | C2H4g14696 | CX4g034804 | LOC_Os04g58400 | Os04g0680550 | - | Detail |
| C1H4g29689 | 4:30,394,547-30,398,942 | + | C2H4g12839 | CX4g034174 | LOC_Os04g58410 | Os04g0680700 | - | Detail |
| C1H4g13492 | 4:30,401,111-30,406,266 | + | C2H4g16137 | CX4g033109 | LOC_Os04g58420 | Os04g0680800 | - | Detail |
| C1H4g22401 | 4:30,405,619-30,406,262 | - | - | - | - | - | - | Detail |
| C1H4g24961 | 4:30,414,343-30,418,897 | - | C2H4g22610 | CX4g035083 | LOC_Os04g58470 | Os04g0681400 | - | Detail |
| C1H4g24560 | 4:30,421,291-30,423,644 | + | C2H4g22295 | CX4g034883 | LOC_Os04g58480 | Os04g0681500 | - | Detail |
| C1H4g20475 | 4:30,425,411-30,429,883 | - | C2H4g02232 | CX4g035384 | LOC_Os04g58504 | Os04g0681600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g28847 | 9:14,495,660-14,501,828 | + | C1H9g14790 | CX9g056670 | LOC_Os09g28480 | Os09g0458400 | - | Detail |
| C2H9g06834 | 9:14,527,167-14,527,978 | + | C1H9g30078 | - | LOC_Os09g28520 | Os09g0459200 | SG1, OsSG1 | Detail |
| C2H9g17751 | 9:14,547,384-14,551,872 | - | C1H9g01784 | CX9g056105 | LOC_Os09g28560 | Os09g0459600 | - | Detail |
| C2H9g06752 | 9:14,555,807-14,567,696 | + | C1H9g28087 | CX9g057640 | LOC_Os09g28570 | Os09g0459800 | - | Detail |
| C2H9g25937 | 9:14,568,988-14,570,284 | - | C1H9g15128 | CX9g055374 | - | Os09g0459900 | - | Detail |
| C2H9g01353 | 9:14,575,563-14,576,426 | + | C1H9g20930 | CX9g056394 | LOC_Os09g28600 | Os09g0460100 | - | Detail |
| C2H9g17816 | 9:14,579,147-14,588,717 | + | C1H9g17836 | CX9g055971 | LOC_Os09g28610 | Os09g0460200 | - | Detail |
| C2H9g21518 | 9:14,592,660-14,593,598 | + | C1H9g11334 | CX9g055140 | LOC_Os09g28640 | Os09g0460500 | - | Detail |
| C2H9g29988 | 9:14,596,327-14,597,068 | - | - | - | - | - | - | Detail |
| C2H9g26252 | 9:14,598,004-14,598,942 | + | C1H9g08722 | CX9g055140 | LOC_Os09g28650 | Os09g0460700 | - | Detail |
| C2H9g05249 | 9:14,628,687-14,629,661 | - | C1H9g31584 | CX9g055140 | LOC_Os09g28750 | Os09g0462200 | - | Detail |
| C2H9g03017 | 9:14,629,957-14,630,593 | - | C1H9g31193 | - | - | Os09g0462301 | - | Detail |
| C2H9g27701 | 9:14,634,127-14,636,646 | + | C1H9g18452 | CX9g057311 | LOC_Os09g28770 | Os09g0462400 | OsMATL2, OspPLAIIeta, OspPLA-IIalpha | Detail |
| C2H9g19629 | 9:14,637,145-14,639,254 | + | C1H9g29610 | CX9g056435 | LOC_Os09g28780 | - | - | Detail |
| C2H9g05705 | 9:14,650,276-14,654,133 | + | C1H9g28013 | CX9g055048 | LOC_Os09g28810 | Os09g0462700 | - | Detail |
| C2H9g21321 | 9:14,655,361-14,655,770 | + | C1H9g15723 | - | - | Os09g0462850 | - | Detail |
| C2H9g19364 | 9:14,657,776-14,660,369 | - | C1H9g15089 | CX9g057216 | LOC_Os09g28830 | Os09g0462875 | - | Detail |
| C2H9g06754 | 9:14,662,217-14,665,042 | - | C1H9g24460 | CX9g056317 | LOC_Os09g28840 | Os09g0463100 | - | Detail |
| C2H9g23768 | 9:14,665,134-14,667,009 | - | C1H9g24460 | CX9g056317 | LOC_Os09g28840 | - | - | Detail |
| C2H9g26932 | 9:14,677,261-14,679,579 | - | C1H9g16758 | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |