| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g13573 | 4:30,042,402-30,042,781 | - | - | - | LOC_Os04g41690 | Os04g0674025 | - | Detail |
| C1H4g25879 | 4:30,050,541-30,052,424 | - | C2H4g22422 | CX4g033668 | LOC_Os04g57780 | Os04g0674100 | - | Detail |
| C1H4g19205 | 4:30,053,279-30,054,513 | + | C2H4g06265 | CX4g033580 | LOC_Os04g57790 | Os04g0674200 | - | Detail |
| C1H4g22285 | 4:30,055,213-30,059,385 | - | C2H4g15166 | CX4g034130 | LOC_Os04g57800 | Os04g0674300 | - | Detail |
| C1H4g01102 | 4:30,062,122-30,062,717 | - | C2H4g17817 | - | - | Os04g0674350 | - | Detail |
| C1H4g13095 | 4:30,062,845-30,065,586 | + | C2H4g23831 | CX4g032486 | LOC_Os04g57810 | Os04g0674400 | OsDRE2a | Detail |
| C1H4g24826 | 4:30,067,470-30,070,688 | + | C2H4g23666 | - | - | - | - | Detail |
| C1H4g09564 | 4:30,070,699-30,072,576 | + | C2H4g26160 | CX4g034361 | LOC_Os04g58380 | Os04g0680300 | - | Detail |
| C1H4g18706 | 4:30,082,444-30,087,410 | - | C2H4g30327 | CX4g031456 | LOC_Os04g58350 | Os04g0680000 | - | Detail |
| C1H4g22413 | 4:30,091,127-30,093,988 | + | C2H4g06224 | CX4g036187 | LOC_Os04g58330 | Os04g0679900 | - | Detail |
| C1H4g30960 | 4:30,095,136-30,097,103 | - | C2H4g13461 | CX4g034013 | LOC_Os04g58320 | Os04g0679800 | - | Detail |
| C1H4g28324 | 4:30,103,031-30,104,297 | + | C2H4g17313 | CX4g036019 | LOC_Os04g58310 | Os04g0679600 | - | Detail |
| C1H4g24807 | 4:30,105,905-30,106,380 | - | - | - | - | - | - | Detail |
| C1H4g21502 | 4:30,110,649-30,112,880 | + | C2H4g26377 | CX4g035780 | LOC_Os04g58280 | Os04g0679400 | - | Detail |
| C1H4g23396 | 4:30,120,350-30,124,285 | + | C2H4g02848 | CX4g034958 | LOC_Os04g58250 | Os04g0679200 | - | Detail |
| C1H4g19757 | 4:30,124,320-30,127,996 | - | C2H4g00450 | CX4g036420 | LOC_Os04g58240 | Os04g0679100 | OsCLC1 | Detail |
| C1H4g26326 | 4:30,131,388-30,133,355 | - | C2H4g18744 | CX4g036290 | LOC_Os04g58230 | Os04g0679050 | OsPLT9 | Detail |
| C1H4g24991 | 4:30,134,578-30,136,827 | - | C2H4g22678 | CX4g033203 | LOC_Os04g58220 | Os04g0679000 | OsPLT8 | Detail |
| C1H4g29091 | 4:30,137,917-30,141,144 | - | C2H4g02268 | CX4g036358 | LOC_Os04g58210 | Os04g0678800 | - | Detail |
| C1H4g18178 | 4:30,141,570-30,143,080 | - | C2H4g27589 | CX4g032472 | LOC_Os04g58200 | Os04g0678700 | OsPORA | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g22972 | 9:319,742-324,687 | + | C1H9g01741 | CX9g057297 | LOC_Os09g01600 | Os09g0103200 | - | Detail |
| C2H9g16676 | 9:328,751-329,740 | - | - | CX9g056224 | LOC_Os09g01610 | Os09g0103400 | - | Detail |
| C2H9g07969 | 9:332,866-338,494 | + | C1H9g12264 | CX9g055170 | LOC_Os09g01620 | Os09g0103500 | - | Detail |
| C2H9g23774 | 9:340,939-347,729 | - | C1H9g24389 | CX9g055607 | LOC_Os09g01630 | Os09g0103600 | - | Detail |
| C2H9g29883 | 9:352,438-353,571 | + | - | CX9g057259 | LOC_Os09g01640 | Os09g0103700 | - | Detail |
| C2H9g16389 | 9:376,815-377,173 | - | C1H9g20260 | CX9g057224 | - | - | - | Detail |
| C2H9g22729 | 9:378,725-385,026 | + | C1H9g06955 | CX9g055907 | LOC_Os09g01650 | Os09g0103800 | - | Detail |
| C2H9g16634 | 9:406,184-412,350 | - | C1H9g22354 | CX9g057376 | LOC_Os09g01680 | Os09g0104200 | RAD51D, OsRAD51D.3, OsRAD51D, OsRad51D | Detail |
| C2H9g14701 | 9:412,420-415,177 | + | C1H9g21586 | - | LOC_Os09g01690 | Os09g0104300 | - | Detail |
| C2H9g10538 | 9:416,660-419,290 | - | - | CX9g056747 | LOC_Os09g01700 | Os09g0104700 | - | Detail |
| C2H9g17453 | 9:446,949-450,853 | - | C1H9g13033 | CX9g054917 | LOC_Os09g01790 | - | - | Detail |
| C2H9g11873 | 9:488,506-491,881 | + | C1H9g15386 | CX9g056345 | - | - | - | Detail |
| C2H9g07049 | 9:540,701-541,678 | - | - | CX9g057727 | LOC_Os09g01960 | Os09g0106700 | - | Detail |
| C2H9g27759 | 9:579,666-579,827 | - | - | CX9g056249 | LOC_Os09g02000 | Os09g0107400 | - | Detail |
| C2H9g16224 | 9:604,424-611,143 | + | C1H9g28229 | CX9g056897 | LOC_Os09g02130 | Os09g0108400 | - | Detail |
| C2H9g00527 | 9:621,532-627,797 | + | C1H9g14656 | CX9g058002 | LOC_Os09g02140 | Os09g0108600 | - | Detail |
| C2H9g13991 | 9:630,539-631,420 | - | - | - | - | - | - | Detail |
| C2H9g03100 | 9:654,975-655,436 | + | - | CX9g056432 | LOC_Os09g02150 | - | - | Detail |
| C2H9g06082 | 9:665,702-671,407 | - | C1H9g00172 | CX9g056152 | LOC_Os09g02170 | Os09g0109500 | - | Detail |
| C2H9g24122 | 9:673,188-673,482 | + | C1H9g18224 | - | LOC_Os09g02180 | Os09g0109600 | OsDSSR1 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |