| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g12548 | 4:29,870,782-29,873,701 | - | C2H4g22497 | CX4g036015 | LOC_Os04g57510 | Os04g0670600 | - | Detail |
| C1H4g28067 | 4:29,874,706-29,880,746 | + | C2H4g29038 | CX4g033656 | LOC_Os04g57520 | Os04g0670800 | - | Detail |
| C1H4g24932 | 4:29,889,703-29,891,698 | - | C2H4g16367 | CX4g035876 | LOC_Os04g57530 | Os04g0670900 | SH4, sh4, SH3, SH3/SH4 | Detail |
| C1H4g07972 | 4:29,895,898-29,897,966 | - | C2H4g09789 | CX4g035340 | LOC_Os04g57540 | Os04g0671100 | - | Detail |
| C1H4g22743 | 4:29,898,781-29,902,244 | - | C2H4g30313 | CX4g036253 | LOC_Os04g57550 | Os04g0671200 | - | Detail |
| C1H4g10516 | 4:29,903,190-29,907,373 | - | C2H4g09887 | CX4g034946 | LOC_Os04g57560 | Os04g0671300 | PAO5, OsPAO5, OsAO2, AO2 | Detail |
| C1H4g18642 | 4:29,914,984-29,917,878 | - | C2H4g11022 | CX4g034217 | LOC_Os04g57590 | Os04g0671700 | OsDJ-1C | Detail |
| C1H4g10863 | 4:29,919,853-29,923,225 | - | C2H4g26599 | CX4g034187 | LOC_Os04g57600 | Os04g0671800 | - | Detail |
| C1H4g29876 | 4:29,925,187-29,932,498 | - | C2H4g28020 | CX4g036532 | LOC_Os04g57610 | Os04g0671900 | - | Detail |
| C1H4g03758 | 4:29,946,857-29,949,895 | - | C2H4g22256 | CX4g032181 | LOC_Os04g57630 | Os04g0672100 | OsPSKR2 | Detail |
| C1H4g28972 | 4:29,961,894-29,967,859 | - | C2H4g16737 | CX4g031927 | LOC_Os04g57640 | Os04g0672200 | - | Detail |
| C1H4g18744 | 4:29,969,283-29,973,110 | - | C2H4g14699 | CX4g031948 | LOC_Os04g57650 | Os04g0672300 | - | Detail |
| C1H4g12099 | 4:29,979,174-29,981,416 | - | C2H4g22256 | CX4g032181 | LOC_Os04g57660 | Os04g0672600 | - | Detail |
| C1H4g02898 | 4:29,987,329-29,990,623 | + | C2H4g13935 | CX4g031387 | LOC_Os04g57680 | Os04g0672800 | - | Detail |
| C1H4g21333 | 4:29,991,614-29,994,014 | + | C2H4g25125 | CX4g034255 | LOC_Os04g57690 | Os04g0672900 | - | Detail |
| C1H4g29753 | 4:29,995,710-30,000,759 | - | C2H4g28032 | CX4g032895 | LOC_Os04g57700 | Os04g0673000 | - | Detail |
| C1H4g17441 | 4:30,023,341-30,023,957 | + | C2H4g17256 | CX4g036002 | LOC_Os04g57720 | Os04g0673300 | RR6, OsRR6, rr6, Rra6, OsRRA6 | Detail |
| C1H4g06545 | 4:30,030,545-30,034,430 | - | C2H4g16666 | CX4g033276 | LOC_Os04g57730 | Os04g0673400 | - | Detail |
| C1H4g12522 | 4:30,037,329-30,037,956 | - | C2H4g21541 | CX4g032931 | LOC_Os04g57750 | Os04g0673800 | - | Detail |
| C1H4g09977 | 4:30,039,911-30,040,867 | - | C2H4g03386 | - | LOC_Os04g57760 | Os04g0674000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g10880 | 5:18,126,767-18,127,750 | + | C1H5g19897 | CX5g039319 | LOC_Os05g36900 | Os05g0440000 | - | Detail |
| C2H5g07278 | 5:18,133,363-18,135,813 | - | C1H5g31606 | CX5g039643 | LOC_Os05g36910 | Os05g0440100 | - | Detail |
| C2H5g18409 | 5:18,137,707-18,139,965 | - | C1H5g15798 | CX5g038860 | LOC_Os05g36920 | Os05g0440250 | OsHDA712 | Detail |
| C2H5g18040 | 5:18,140,520-18,140,966 | - | C1H8g21037 | CX8g051236 | - | - | - | Detail |
| C2H5g22538 | 5:18,145,061-18,147,287 | - | C1H5g18373 | CX5g037033 | LOC_Os05g36920 | Os05g0440250 | OsHDA712 | Detail |
| C2H5g10085 | 5:18,156,378-18,162,343 | + | C1H5g03011 | CX5g038922 | LOC_Os05g36960 | Os05g0440800 | - | Detail |
| C2H5g22593 | 5:18,164,942-18,165,664 | + | C1H5g17274 | CX5g036721 | LOC_Os05g36970 | Os05g0440900 | - | Detail |
| C2H5g17186 | 5:18,179,859-18,180,920 | - | C1H5g20030 | CX5g036937 | LOC_Os05g36990 | Os05g0441400 | - | Detail |
| C2H5g09677 | 5:18,190,179-18,190,682 | + | C1H11g06384 | CX5g039812 | LOC_Os05g37000 | Os05g0441750 | - | Detail |
| C2H5g15759 | 5:18,198,085-18,198,720 | + | - | - | LOC_Os05g37010 | - | - | Detail |
| C2H5g23100 | 5:18,206,012-18,206,416 | - | C1H5g03898 | CX5g037991 | LOC_Os05g37030 | Os05g0442000 | - | Detail |
| C2H5g23234 | 5:18,226,547-18,227,490 | - | C1H5g24883 | CX5g037273 | LOC_Os05g37050 | Os05g0442400 | MID1, OsMYB-1 | Detail |
| C2H5g00840 | 5:18,230,945-18,231,762 | - | C1H5g10359 | CX5g037170 | LOC_Os05g37060 | Os05g0442400 | MID1, OsMYB-1 | Detail |
| C2H5g00201 | 5:18,237,620-18,238,849 | - | C1H5g08191 | CX5g040230 | LOC_Os05g37080 | Os05g0442700 | - | Detail |
| C2H5g12660 | 5:18,241,339-18,245,198 | + | - | CX5g038652 | - | - | - | Detail |
| C2H5g28484 | 5:18,260,199-18,265,647 | - | C1H5g19867 | CX5g039130 | LOC_Os05g37120 | Os05g0443300 | - | Detail |
| C2H5g27590 | 5:18,267,776-18,271,342 | - | C1H5g09712 | CX5g039104 | LOC_Os05g37130 | Os05g0443400 | - | Detail |
| C2H5g23800 | 5:18,273,845-18,274,246 | - | C1H5g30431 | CX1g006506 | LOC_Os05g37140 | Os05g0443500 | - | Detail |
| C2H5g20139 | 5:18,276,193-18,279,778 | - | C1H5g02201 | CX5g036774 | LOC_Os05g37150 | Os05g0443700 | - | Detail |
| C2H5g16230 | 5:18,280,028-18,283,707 | - | C1H5g03814 | CX5g036747 | LOC_Os05g37160 | Os05g0443800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |